Gene Swoo_3533 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3533 
Symbol 
ID6117865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4314363 
End bp4315421 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content44% 
IMG OID641635084 
ProductTMAO reductase system periplasmic protein TorT 
Protein accessionYP_001761892 
Protein GI170727866 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID[TIGR02955] TMAO reductase system periplasmic protein TorT 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.292009 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCACTTC TCTTTGCCCT GCAGGTCAAC AGTGAAACTT GGCCCTTAGA GCAGCGTACT 
CCTTATAATA CCAAGGTTCA AACCGCAAGC AGTCTGCTTT ACACACCGCT AAAACAGACT
CAAAAACCTT GGAAAATCTG TGCACTTGTT CCTCACCTAA AGGATGCTTA CTGGATCGGC
ATTGATTATG GCTTAGTCCA GCAAGCCACC AAGCTCAATA TCAAACTCGA GCTGTTTGAA
GCAGGTAGTT ACTACCACAA AAAGAAACAG CTAGAACAAC TCAGCAACTG CATGAAAGAG
GATTTTGATG CCATTTTACT TGGCACAGTC GACCCCAAAC TCATTGCATA TTACCACGGT
CCAATTACTA AGCCAGTTAT CGCATTAGTC AACAGAGTGG ATAGCCCTAC CATTACGACA
CGGATCGGAG TCAATTGGTA TCAGATGGGC TGGCATGCTG GTCAGTTTAT CAAAAATGAT
TTAGCCCAAA CTCCTACAAG CAGCCGTAAG AAACAGAAGG ATTTAGCGCT ACTAACCGGC
CCAGAAAAAT TAGGTGGAAG TGATTGGGTA GACCAAGGGG TATTCGATGC GTTAAAAGAG
AGCGATATCA AAATTTCCTC TATACGTCAT GCAGACAATA ATCGGGATCT TTACCGAGAT
CAGCTACATC ACCTACTCGA TGATCAGAGC CCAGATTACA TCTTAGGCAG CGCCGTCGCG
ATTGAGGCGG CCATCGGCGA AATAGGCCAT AAACATTTAG AAGGTAAAGT TAAACTTGTC
AGTAGTTACC TATCTCCAGG TGTACTAAGA GGCTTATTCA GAAATAAGGT CTCCTTTAGC
AGCGATGACT TAGTGGTTCT ACAGGGGAAA CTGGCTATTG ATATTGTTGT CAGAGAGCTA
GAAGGAAAAG CTGTTCATGG TGATATTGGT CCCAAGATTC AGAGCATAAA CGCTCAGGAG
CTCAATAAAG ACAAGATAAA AAACAAACTG AGCAAGAGCC TAGCCCCAGC CCACTTCTAC
CCTGTCTACA GTGTTACGCC AAATAATCGA AAAAAGTGA
 
Protein sequence
MPLLFALQVN SETWPLEQRT PYNTKVQTAS SLLYTPLKQT QKPWKICALV PHLKDAYWIG 
IDYGLVQQAT KLNIKLELFE AGSYYHKKKQ LEQLSNCMKE DFDAILLGTV DPKLIAYYHG
PITKPVIALV NRVDSPTITT RIGVNWYQMG WHAGQFIKND LAQTPTSSRK KQKDLALLTG
PEKLGGSDWV DQGVFDALKE SDIKISSIRH ADNNRDLYRD QLHHLLDDQS PDYILGSAVA
IEAAIGEIGH KHLEGKVKLV SSYLSPGVLR GLFRNKVSFS SDDLVVLQGK LAIDIVVREL
EGKAVHGDIG PKIQSINAQE LNKDKIKNKL SKSLAPAHFY PVYSVTPNNR KK