Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3533 |
Symbol | |
ID | 6117865 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4314363 |
End bp | 4315421 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641635084 |
Product | TMAO reductase system periplasmic protein TorT |
Protein accession | YP_001761892 |
Protein GI | 170727866 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | [TIGR02955] TMAO reductase system periplasmic protein TorT |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.292009 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCACTTC TCTTTGCCCT GCAGGTCAAC AGTGAAACTT GGCCCTTAGA GCAGCGTACT CCTTATAATA CCAAGGTTCA AACCGCAAGC AGTCTGCTTT ACACACCGCT AAAACAGACT CAAAAACCTT GGAAAATCTG TGCACTTGTT CCTCACCTAA AGGATGCTTA CTGGATCGGC ATTGATTATG GCTTAGTCCA GCAAGCCACC AAGCTCAATA TCAAACTCGA GCTGTTTGAA GCAGGTAGTT ACTACCACAA AAAGAAACAG CTAGAACAAC TCAGCAACTG CATGAAAGAG GATTTTGATG CCATTTTACT TGGCACAGTC GACCCCAAAC TCATTGCATA TTACCACGGT CCAATTACTA AGCCAGTTAT CGCATTAGTC AACAGAGTGG ATAGCCCTAC CATTACGACA CGGATCGGAG TCAATTGGTA TCAGATGGGC TGGCATGCTG GTCAGTTTAT CAAAAATGAT TTAGCCCAAA CTCCTACAAG CAGCCGTAAG AAACAGAAGG ATTTAGCGCT ACTAACCGGC CCAGAAAAAT TAGGTGGAAG TGATTGGGTA GACCAAGGGG TATTCGATGC GTTAAAAGAG AGCGATATCA AAATTTCCTC TATACGTCAT GCAGACAATA ATCGGGATCT TTACCGAGAT CAGCTACATC ACCTACTCGA TGATCAGAGC CCAGATTACA TCTTAGGCAG CGCCGTCGCG ATTGAGGCGG CCATCGGCGA AATAGGCCAT AAACATTTAG AAGGTAAAGT TAAACTTGTC AGTAGTTACC TATCTCCAGG TGTACTAAGA GGCTTATTCA GAAATAAGGT CTCCTTTAGC AGCGATGACT TAGTGGTTCT ACAGGGGAAA CTGGCTATTG ATATTGTTGT CAGAGAGCTA GAAGGAAAAG CTGTTCATGG TGATATTGGT CCCAAGATTC AGAGCATAAA CGCTCAGGAG CTCAATAAAG ACAAGATAAA AAACAAACTG AGCAAGAGCC TAGCCCCAGC CCACTTCTAC CCTGTCTACA GTGTTACGCC AAATAATCGA AAAAAGTGA
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Protein sequence | MPLLFALQVN SETWPLEQRT PYNTKVQTAS SLLYTPLKQT QKPWKICALV PHLKDAYWIG IDYGLVQQAT KLNIKLELFE AGSYYHKKKQ LEQLSNCMKE DFDAILLGTV DPKLIAYYHG PITKPVIALV NRVDSPTITT RIGVNWYQMG WHAGQFIKND LAQTPTSSRK KQKDLALLTG PEKLGGSDWV DQGVFDALKE SDIKISSIRH ADNNRDLYRD QLHHLLDDQS PDYILGSAVA IEAAIGEIGH KHLEGKVKLV SSYLSPGVLR GLFRNKVSFS SDDLVVLQGK LAIDIVVREL EGKAVHGDIG PKIQSINAQE LNKDKIKNKL SKSLAPAHFY PVYSVTPNNR KK
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