Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3521 |
Symbol | |
ID | 6117853 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4295168 |
End bp | 4298881 |
Gene Length | 3714 bp |
Protein Length | 1237 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 641635072 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_001761880 |
Protein GI | 170727854 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG3292] Predicted periplasmic ligand-binding sensor domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAATTT TCATTTTAAG TGTAATTTGG TTAATTGGCT GCCCTCTTTT TGCCATGGAA AACCAGCCTA TTTTCGACGC CTATAAAGCG GAACAAGGGC TGTCGATGAA CACTGTCAAC GACATAGTGA CAGATGATCA GGGGTTTCTT TGGATAGCCA CTCAAGCAGG GCTTAATCGT TATGACGGAA AGCACTTTAA ACTCTATCAG GCGGGCGATC ATAAAGGCCC TACAGAGAAG CACATCCAAA AGCTTTTCTT CGGTAGAAAG AAACAGTTAT GGTTGCTCAC TAAAAGTGAT GGACTAAATC TATATCAAGC AAACACTGAT ACCTTTATCC CCTTTAATGA GTCAAACAGC CCCCTCTCTA ATACAGGTAT CATAGATTTG TACCAAGATA GCCGCGGCAT CTTGTGGCTA GCAACCCATG ATAATGGCTT AATTCAGTAC TCTCCCACCG AAAATAGGAT CCTTCATCAT TTTCTCTCCT CCCCAAACAA TAAAGGACTT ATCAGCAATC GATTAAACTT AATCTTCGGC GATCAGTTTG ATCGAATCTG GTTAGTCTCT GATAAGGGGC TATCTCTAAT CGAGCCTGAT AATGAAATCA TCAATTTCCC ACAAATAAAC AGTGAGCTGG GTGACAGTAT AAGCAGCTTG GAAATTGGGA AAAGTAATAC GCTTTGGATC GGAACCAAAG AGAGAGGTTT GTACCTATTT GATATTCAAA CAGGAGCACT TAAACCGATA ACCGCTGCAT CACAACTCGA AAATGACACC GTCACTCACC TTAAAAAAGA CAAATTTGGT AAGCTCTGGA TTGCAGTTCA CGGTAAAGGA TTAGCCAGAT ATTCCCCCCA ATCAAATAAG CTTCTCTATT TTGACAGTGC AGCAGAGGAT AAACACAGTC TCAATAGTGT ACATGTGACC TCCTTTGCTA TAGACAGCGA ACATCAACTT TGGGTCGGCA CCCGTGGCGG AGGACTGAAT AAAACTTATC TGGAGGCCGA AAGTTTTGGT CATATCAGTA CCGGTAACTT TAAAGATCAC CCGCTTGAAA ATAGCAATAT CAGAAGTATT TTCAGAGATC ATCAACAGCA ACTCTGGATT GGTACTGCAG CTGGCCTCTT TCAGGCCCAT GAAGACATAA ACAGAGAGAT CACAGGCTTC TCTCTATTTG AGGTAGCAGG GATCCAAATA ACCGATCTTT TCATCAGCTT TATCAGGGAA GATGAACAAA AACGGTTCTG GGTAGGAACT AGAGGTAAAG GCTTGTTTAT CTTCTCCCCC GACAAGCAAA GTTACACTCG CTATCAATAT CAGGTAGGCA ATCACAATGG ACTGCCCAGT AACTACCTTT ACAGCTTATA TTTCGATGAT GAAAGTCGAG CTTGGATCTC AACTAAAGAC TCAGGGGTCG CACGATATAT AGATGAAGAG CAAGGATTTA TTCAATATAA ACACGACAGA AATGATCCTA ACTCACTATC AAGCAACGAG ATAACCAATC TCGTTCAAGA TAGTGAAGGA AACTTTTGGT TTACCTCCTA TGACAAAGGA CTAAGTAGAC TAGACAAACA AGGGAAATTT ACCCACTTCA ATACCCAAAC CGAGTCATCA ATTCCAAATA AGCACCTGAT GTCTATCCAC CAAGGAGGTG GTGACAATTT ATGGATAAGT ACCAATAATG GGATCTTCTC ATTTAATACA AAAAGTTATG AAACTAAGCT ATTCAGTACT GATAATGGAT TAATTGGCAA TGTTGCCTAC CTAACATTAA TGGATAACAA GAAAAACCTC TGGATAGGGA CAGCATCAGG CCTTAGTATG CTTAATACTC ATAACTTGAG CATCAGAAAC TTTACCTATA TAGATGGTTT ACAAGATAAT GAGTTTAACT TCGGTGCTGG CTTTATCGAT ACCGATAACC GTATCTATCT TGGTGGCATA AACGGATTTA ATCATTTTTT CACCTCTCAA CTACCAAAAT TATCCCCACC AAGACAGCCT TTACTCGAAA CCTTAACTAT CTTAAACGGA TCTCAATCCA GTATCTCTGA GACTCAAAAA GTAAAAATTA CTCAAGAAGA TAAGATAAAG CTCTCCTACC AACATGATAT TTTTACACTG TCGTTCCTCA CACCTGCGCT TCATAGAGCA AAACGGTTAG TGTATGAATA TAAAATGCTA GGATTACATG ACAGTTGGTT GGTCGCCAAT ACTGATCAAA CCGCTCAATT CACAGGTTTG TCATCGGGTA ATTACGCCTT CCTCCTCAGA GCAAAGGATA TAGATGGCAA ATACAGCCCT ATTCGTCGTC TGGATATTCA AGTATTAGCA GCCCCTTGGT TATCTTGGTG GGCAATCACT CTCTACGTCG TGGCTTTTAT CACCCTATTT TCACTATTGT ATTATTCGAA ACTCAAAAAA TATAATGAAC AAAACCTGCT GTTAAAAGAG ATAGAGCAAA GTGAGCAGAG GCTACAGCTC TCCTTGTGGG GAAGTGGAGA TGAGTTTTGG GATTGGAATA TTGTAGATAA ACAGATAGTG CGCACAAATG TATTTCTCCA ATACCCAGAA AAAGAGTTCC GTCTGCACGA TACAATGCAG CAGTGTGTCC ACCCTGATGA TCTACCCAAT ATAATGACAG AGACCGATGC CTGCATGAAA AAAGGCAAAG ACAAATTTGA GTTAACCTAT CGCTCAAAAC TCACTGATGG TGGTTGGCTA TGGGTCTTAA ATAGAGGACA AGTCATTCTT AGGGATCAGC TTGCTCGCCC CTCAAGACTA GCTGGAACAA TTAAGAATAT TCAATCTCAG AAAGAGACTG AAACCGCTCT AAGGACCCTG AACCAAGATT TAGAGAAGAG AGTATTTAGC CGTACCAGTG AACTGCAAAA AAGTAATGAT GAACTCACCG AGACCTTAGA GGAGTTAAAG TTCACTCAAG GTGAGCTTAT CGATAAAGAG AAGATGGCCA CACTAGGTGG TTTGGTTGCC AGTATAACCC ATGAGATAAA TACACCGATT GGGATCAGTG TTACCGCCGC ATCTCACCTA CACAATAGTG TAGAGATATT TAATCAACAC TATAATGAAG GTGAGATATC TCAAGAAGAG TTTGAAGACT ATCAAATAGA AGTATCAGAC TGTTCAAAGC TAATCTTAAC AAACTTAGAG CGGGCTTCTA AACTCATCCA AAGCTTCAAA AAAGTCTCGG TTGACCAATC CCATGAAGAT GTCAGAGAGT TTGACCTTAA GAGCTATCTA GATGAGATTT TCCTCTCCCT TAATCCCATG CTCTCAAGAA CAGCTCATCA ATACAGTTAT CAATGTAAAG ACAGCATAGT AATAAAAAGT AATCCAGGTG CTTTCTACCA AATTATCAGC AACTTAATTA ATAACTCTAT CGTACATGCC TTTCCTGATG GCCGCTCAGG TGAACTCAAT TTAACCGTTA CATGTTCAAA TTCTGGCATC GAGATCATCT ACCAAGACAA TGGTTGTGGT ATGCCTGAGC ATGTACAAGA GAAGATATTC TCCCCTTTCT TCACGACGAA GCGAGGCAAA GGAGGCAGTG GCTTAGGCAT GAATATCGTC TACAACTTAG TCACTCAGGT ACTTGAAGGT GAGGTAGAAC TAACTTCGAC AATCGATAAT GGCAGTCTGT TCAAAATATC TTTACCTTCA TCACTCCTGA TAAATTCCGC ATAA
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Protein sequence | MRIFILSVIW LIGCPLFAME NQPIFDAYKA EQGLSMNTVN DIVTDDQGFL WIATQAGLNR YDGKHFKLYQ AGDHKGPTEK HIQKLFFGRK KQLWLLTKSD GLNLYQANTD TFIPFNESNS PLSNTGIIDL YQDSRGILWL ATHDNGLIQY SPTENRILHH FLSSPNNKGL ISNRLNLIFG DQFDRIWLVS DKGLSLIEPD NEIINFPQIN SELGDSISSL EIGKSNTLWI GTKERGLYLF DIQTGALKPI TAASQLENDT VTHLKKDKFG KLWIAVHGKG LARYSPQSNK LLYFDSAAED KHSLNSVHVT SFAIDSEHQL WVGTRGGGLN KTYLEAESFG HISTGNFKDH PLENSNIRSI FRDHQQQLWI GTAAGLFQAH EDINREITGF SLFEVAGIQI TDLFISFIRE DEQKRFWVGT RGKGLFIFSP DKQSYTRYQY QVGNHNGLPS NYLYSLYFDD ESRAWISTKD SGVARYIDEE QGFIQYKHDR NDPNSLSSNE ITNLVQDSEG NFWFTSYDKG LSRLDKQGKF THFNTQTESS IPNKHLMSIH QGGGDNLWIS TNNGIFSFNT KSYETKLFST DNGLIGNVAY LTLMDNKKNL WIGTASGLSM LNTHNLSIRN FTYIDGLQDN EFNFGAGFID TDNRIYLGGI NGFNHFFTSQ LPKLSPPRQP LLETLTILNG SQSSISETQK VKITQEDKIK LSYQHDIFTL SFLTPALHRA KRLVYEYKML GLHDSWLVAN TDQTAQFTGL SSGNYAFLLR AKDIDGKYSP IRRLDIQVLA APWLSWWAIT LYVVAFITLF SLLYYSKLKK YNEQNLLLKE IEQSEQRLQL SLWGSGDEFW DWNIVDKQIV RTNVFLQYPE KEFRLHDTMQ QCVHPDDLPN IMTETDACMK KGKDKFELTY RSKLTDGGWL WVLNRGQVIL RDQLARPSRL AGTIKNIQSQ KETETALRTL NQDLEKRVFS RTSELQKSND ELTETLEELK FTQGELIDKE KMATLGGLVA SITHEINTPI GISVTAASHL HNSVEIFNQH YNEGEISQEE FEDYQIEVSD CSKLILTNLE RASKLIQSFK KVSVDQSHED VREFDLKSYL DEIFLSLNPM LSRTAHQYSY QCKDSIVIKS NPGAFYQIIS NLINNSIVHA FPDGRSGELN LTVTCSNSGI EIIYQDNGCG MPEHVQEKIF SPFFTTKRGK GGSGLGMNIV YNLVTQVLEG EVELTSTIDN GSLFKISLPS SLLINSA
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