| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3521 |
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| Symbol | |
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| ID | 6117853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4295168 |
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| End bp | 4298881 |
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| Gene Length | 3714 bp |
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| Protein Length | 1237 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 641635072 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001761880 |
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| Protein GI | 170727854 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG3292] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAATTT TCATTTTAAG TGTAATTTGG TTAATTGGCT GCCCTCTTTT TGCCATGGAA
AACCAGCCTA TTTTCGACGC CTATAAAGCG GAACAAGGGC TGTCGATGAA CACTGTCAAC
GACATAGTGA CAGATGATCA GGGGTTTCTT TGGATAGCCA CTCAAGCAGG GCTTAATCGT
TATGACGGAA AGCACTTTAA ACTCTATCAG GCGGGCGATC ATAAAGGCCC TACAGAGAAG
CACATCCAAA AGCTTTTCTT CGGTAGAAAG AAACAGTTAT GGTTGCTCAC TAAAAGTGAT
GGACTAAATC TATATCAAGC AAACACTGAT ACCTTTATCC CCTTTAATGA GTCAAACAGC
CCCCTCTCTA ATACAGGTAT CATAGATTTG TACCAAGATA GCCGCGGCAT CTTGTGGCTA
GCAACCCATG ATAATGGCTT AATTCAGTAC TCTCCCACCG AAAATAGGAT CCTTCATCAT
TTTCTCTCCT CCCCAAACAA TAAAGGACTT ATCAGCAATC GATTAAACTT AATCTTCGGC
GATCAGTTTG ATCGAATCTG GTTAGTCTCT GATAAGGGGC TATCTCTAAT CGAGCCTGAT
AATGAAATCA TCAATTTCCC ACAAATAAAC AGTGAGCTGG GTGACAGTAT AAGCAGCTTG
GAAATTGGGA AAAGTAATAC GCTTTGGATC GGAACCAAAG AGAGAGGTTT GTACCTATTT
GATATTCAAA CAGGAGCACT TAAACCGATA ACCGCTGCAT CACAACTCGA AAATGACACC
GTCACTCACC TTAAAAAAGA CAAATTTGGT AAGCTCTGGA TTGCAGTTCA CGGTAAAGGA
TTAGCCAGAT ATTCCCCCCA ATCAAATAAG CTTCTCTATT TTGACAGTGC AGCAGAGGAT
AAACACAGTC TCAATAGTGT ACATGTGACC TCCTTTGCTA TAGACAGCGA ACATCAACTT
TGGGTCGGCA CCCGTGGCGG AGGACTGAAT AAAACTTATC TGGAGGCCGA AAGTTTTGGT
CATATCAGTA CCGGTAACTT TAAAGATCAC CCGCTTGAAA ATAGCAATAT CAGAAGTATT
TTCAGAGATC ATCAACAGCA ACTCTGGATT GGTACTGCAG CTGGCCTCTT TCAGGCCCAT
GAAGACATAA ACAGAGAGAT CACAGGCTTC TCTCTATTTG AGGTAGCAGG GATCCAAATA
ACCGATCTTT TCATCAGCTT TATCAGGGAA GATGAACAAA AACGGTTCTG GGTAGGAACT
AGAGGTAAAG GCTTGTTTAT CTTCTCCCCC GACAAGCAAA GTTACACTCG CTATCAATAT
CAGGTAGGCA ATCACAATGG ACTGCCCAGT AACTACCTTT ACAGCTTATA TTTCGATGAT
GAAAGTCGAG CTTGGATCTC AACTAAAGAC TCAGGGGTCG CACGATATAT AGATGAAGAG
CAAGGATTTA TTCAATATAA ACACGACAGA AATGATCCTA ACTCACTATC AAGCAACGAG
ATAACCAATC TCGTTCAAGA TAGTGAAGGA AACTTTTGGT TTACCTCCTA TGACAAAGGA
CTAAGTAGAC TAGACAAACA AGGGAAATTT ACCCACTTCA ATACCCAAAC CGAGTCATCA
ATTCCAAATA AGCACCTGAT GTCTATCCAC CAAGGAGGTG GTGACAATTT ATGGATAAGT
ACCAATAATG GGATCTTCTC ATTTAATACA AAAAGTTATG AAACTAAGCT ATTCAGTACT
GATAATGGAT TAATTGGCAA TGTTGCCTAC CTAACATTAA TGGATAACAA GAAAAACCTC
TGGATAGGGA CAGCATCAGG CCTTAGTATG CTTAATACTC ATAACTTGAG CATCAGAAAC
TTTACCTATA TAGATGGTTT ACAAGATAAT GAGTTTAACT TCGGTGCTGG CTTTATCGAT
ACCGATAACC GTATCTATCT TGGTGGCATA AACGGATTTA ATCATTTTTT CACCTCTCAA
CTACCAAAAT TATCCCCACC AAGACAGCCT TTACTCGAAA CCTTAACTAT CTTAAACGGA
TCTCAATCCA GTATCTCTGA GACTCAAAAA GTAAAAATTA CTCAAGAAGA TAAGATAAAG
CTCTCCTACC AACATGATAT TTTTACACTG TCGTTCCTCA CACCTGCGCT TCATAGAGCA
AAACGGTTAG TGTATGAATA TAAAATGCTA GGATTACATG ACAGTTGGTT GGTCGCCAAT
ACTGATCAAA CCGCTCAATT CACAGGTTTG TCATCGGGTA ATTACGCCTT CCTCCTCAGA
GCAAAGGATA TAGATGGCAA ATACAGCCCT ATTCGTCGTC TGGATATTCA AGTATTAGCA
GCCCCTTGGT TATCTTGGTG GGCAATCACT CTCTACGTCG TGGCTTTTAT CACCCTATTT
TCACTATTGT ATTATTCGAA ACTCAAAAAA TATAATGAAC AAAACCTGCT GTTAAAAGAG
ATAGAGCAAA GTGAGCAGAG GCTACAGCTC TCCTTGTGGG GAAGTGGAGA TGAGTTTTGG
GATTGGAATA TTGTAGATAA ACAGATAGTG CGCACAAATG TATTTCTCCA ATACCCAGAA
AAAGAGTTCC GTCTGCACGA TACAATGCAG CAGTGTGTCC ACCCTGATGA TCTACCCAAT
ATAATGACAG AGACCGATGC CTGCATGAAA AAAGGCAAAG ACAAATTTGA GTTAACCTAT
CGCTCAAAAC TCACTGATGG TGGTTGGCTA TGGGTCTTAA ATAGAGGACA AGTCATTCTT
AGGGATCAGC TTGCTCGCCC CTCAAGACTA GCTGGAACAA TTAAGAATAT TCAATCTCAG
AAAGAGACTG AAACCGCTCT AAGGACCCTG AACCAAGATT TAGAGAAGAG AGTATTTAGC
CGTACCAGTG AACTGCAAAA AAGTAATGAT GAACTCACCG AGACCTTAGA GGAGTTAAAG
TTCACTCAAG GTGAGCTTAT CGATAAAGAG AAGATGGCCA CACTAGGTGG TTTGGTTGCC
AGTATAACCC ATGAGATAAA TACACCGATT GGGATCAGTG TTACCGCCGC ATCTCACCTA
CACAATAGTG TAGAGATATT TAATCAACAC TATAATGAAG GTGAGATATC TCAAGAAGAG
TTTGAAGACT ATCAAATAGA AGTATCAGAC TGTTCAAAGC TAATCTTAAC AAACTTAGAG
CGGGCTTCTA AACTCATCCA AAGCTTCAAA AAAGTCTCGG TTGACCAATC CCATGAAGAT
GTCAGAGAGT TTGACCTTAA GAGCTATCTA GATGAGATTT TCCTCTCCCT TAATCCCATG
CTCTCAAGAA CAGCTCATCA ATACAGTTAT CAATGTAAAG ACAGCATAGT AATAAAAAGT
AATCCAGGTG CTTTCTACCA AATTATCAGC AACTTAATTA ATAACTCTAT CGTACATGCC
TTTCCTGATG GCCGCTCAGG TGAACTCAAT TTAACCGTTA CATGTTCAAA TTCTGGCATC
GAGATCATCT ACCAAGACAA TGGTTGTGGT ATGCCTGAGC ATGTACAAGA GAAGATATTC
TCCCCTTTCT TCACGACGAA GCGAGGCAAA GGAGGCAGTG GCTTAGGCAT GAATATCGTC
TACAACTTAG TCACTCAGGT ACTTGAAGGT GAGGTAGAAC TAACTTCGAC AATCGATAAT
GGCAGTCTGT TCAAAATATC TTTACCTTCA TCACTCCTGA TAAATTCCGC ATAA
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| Protein sequence | MRIFILSVIW LIGCPLFAME NQPIFDAYKA EQGLSMNTVN DIVTDDQGFL WIATQAGLNR
YDGKHFKLYQ AGDHKGPTEK HIQKLFFGRK KQLWLLTKSD GLNLYQANTD TFIPFNESNS
PLSNTGIIDL YQDSRGILWL ATHDNGLIQY SPTENRILHH FLSSPNNKGL ISNRLNLIFG
DQFDRIWLVS DKGLSLIEPD NEIINFPQIN SELGDSISSL EIGKSNTLWI GTKERGLYLF
DIQTGALKPI TAASQLENDT VTHLKKDKFG KLWIAVHGKG LARYSPQSNK LLYFDSAAED
KHSLNSVHVT SFAIDSEHQL WVGTRGGGLN KTYLEAESFG HISTGNFKDH PLENSNIRSI
FRDHQQQLWI GTAAGLFQAH EDINREITGF SLFEVAGIQI TDLFISFIRE DEQKRFWVGT
RGKGLFIFSP DKQSYTRYQY QVGNHNGLPS NYLYSLYFDD ESRAWISTKD SGVARYIDEE
QGFIQYKHDR NDPNSLSSNE ITNLVQDSEG NFWFTSYDKG LSRLDKQGKF THFNTQTESS
IPNKHLMSIH QGGGDNLWIS TNNGIFSFNT KSYETKLFST DNGLIGNVAY LTLMDNKKNL
WIGTASGLSM LNTHNLSIRN FTYIDGLQDN EFNFGAGFID TDNRIYLGGI NGFNHFFTSQ
LPKLSPPRQP LLETLTILNG SQSSISETQK VKITQEDKIK LSYQHDIFTL SFLTPALHRA
KRLVYEYKML GLHDSWLVAN TDQTAQFTGL SSGNYAFLLR AKDIDGKYSP IRRLDIQVLA
APWLSWWAIT LYVVAFITLF SLLYYSKLKK YNEQNLLLKE IEQSEQRLQL SLWGSGDEFW
DWNIVDKQIV RTNVFLQYPE KEFRLHDTMQ QCVHPDDLPN IMTETDACMK KGKDKFELTY
RSKLTDGGWL WVLNRGQVIL RDQLARPSRL AGTIKNIQSQ KETETALRTL NQDLEKRVFS
RTSELQKSND ELTETLEELK FTQGELIDKE KMATLGGLVA SITHEINTPI GISVTAASHL
HNSVEIFNQH YNEGEISQEE FEDYQIEVSD CSKLILTNLE RASKLIQSFK KVSVDQSHED
VREFDLKSYL DEIFLSLNPM LSRTAHQYSY QCKDSIVIKS NPGAFYQIIS NLINNSIVHA
FPDGRSGELN LTVTCSNSGI EIIYQDNGCG MPEHVQEKIF SPFFTTKRGK GGSGLGMNIV
YNLVTQVLEG EVELTSTIDN GSLFKISLPS SLLINSA
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