| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3507 |
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| Symbol | |
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| ID | 6117839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4277095 |
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| End bp | 4280133 |
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| Gene Length | 3039 bp |
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| Protein Length | 1012 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641635058 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001761866 |
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| Protein GI | 170727840 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCTTTA CTTTAGTGCA AAATACTGCG CTTTTGTTAG CCATGGTATT TATCTATGAT
GCGGTGCCTA GAAAGCAGCG AGATGAGTAT CTTTTTCTCT GGCAACTCAG TGTAGGAGCC
ATCATAGGTG GCATAACCAT GACCAGCGTG ATGGCATCAT GGGAGTATTC TCAAGGTCAG
TATTTCGATG CTCGCTCAGT TATACTGGGG ATCTCCGGCG TTTTTTTTGG TGGATTACCT
ACGCTTATTG CCGTGTTCTT AGCTTCCATT TTTAGTTTTT ATGAGGGGGG AGTTGGGGTT
TGGTTTGAGA TTGGTATGAT GGTTTCAGCT GGATTATTGG GCTGCTTGTG GCGTTACTAT
TGTCATAGAG CGGTTGTTGA TATCTCTAAT ATTCAGTTCT ACTCATTCGG CATGATCCTG
CAATGTATTA CTCTGCTATG GTTGTTTATT CTACCCTTTG AGATGGCTGT GAATACGTTA
AATAGCGTTG CTTTTCCGAC TTTAATTATC TACCCCGTTG CTTTTTTACT GCTTAGTTCA
CTACTCGCTA GGCGGCTGGA AATGGAGCGA GATGCCAATA TTCAGCTTCA AGATGACCTC
ATTTTTCGCT CTCAATTCAA CATTGGCAAT ATTGGTATTG CAATTTCATC GGTGGATCAA
CACTGGATCA AAGTTAATCC ACGGGTGTGT CAGATGCTCA AATACAGTGA AAAAGAGCTA
TTGGCAATGA AGTGGAGTGA TATGACCTAT TTTGAGGATC TTCAAACGGG CTTAAATCAG
TTCGATAGAA TGCTCAAAGG GGAGATTGAT GAATATGAGA TGGATATGCG ATTTGTGGCT
AAAGATAACT CAATTGTTTA TACCCACTTA ACTGTCGCTT GCCAAAGAAA GAATAACAAG
GTTCTACTCG TTATCTCAGG TTTGTTGGAT ATTACTTCAC AGAAACTCGC TGAGTCAGCC
ATGTGTGCAA GCCAAGAGCA GTTAGCTTTA GTCTTAGATA GTAGCGAACT TGGTTTATGG
GATTGGGATA TCAAATCTAA CAAAGTAGAG CGTAATACCC GCTGTGCAAG TCTACTTGGC
TGCAGTGTCG AAGAGTTAAA TCGAGATGAG AGGGTATGGA TCAATGCCAT TCACCGCTCT
GATAGAGTCG ATGTATTGCA CTCTATTGAT GCTCACCTTA AGGGAGAGAC CTCTCACCAT
AGTATTGAAT ATCGGTTAAA TACTTTCTCT GGGGAGACCA TCTGGATCCA AGATAGCGGC
AAAGTGGTCA GTAAAGATGA GCAAGGCTCA CCTGTTCGCA TGTGTGGTAC TCATATGGAT
ATTACCGCAC GAAAAAGGGG GGAGGAGTCT CTTAATCTGG CAGCTTCTGT GTATAACAAC
TCCAGTGAGG CGATGAGTGT TCAGGATAAA GAGGGGAATA TCATTACCAT AAACTCTGCC
TTTACTGAGA TAACAGGTTA TAGGGAAGAT GAGATAATTA ATCAGCACAT CAGTATCTTG
CAGTGTGATA GTTCGAGTAA GAAAACCTTT GTGCAGATGA GAAGTACCAT TGAAGAAACC
GGACGGTGGA ATGGAGAAAT TTGGCTTAAG CACAAAAGGG GCTCTGAGCA CATTGTTAGG
TTAACCATCA ATACCATATT GGATAATCGA GGTGAGGTCT ATCGGCGGGT GGCGCTCTTT
TCCGATATAA CGGAGAAGAA ACAAGCTGAG CACATTATCT GGAAACAGGC CAACTATGAC
CCCTTAACAA GTTTACCTAA TCGGCGGATG TTGCTGGAAT ATTTAGGCAC TGAGCTACTT
AAGTCTGACC GTAGCAAGCA GCATTTTGCT CTGATGTTTT TAGACTTGGA TTTTTTCAAA
GAAGTTAACG ACGCCTTGGG TCATGATATC GGTGATCTGC TGCTGGTTGA AACGGCAAAA
CGGTTGAAGG GCTGTATTCG TGAGTCTGAT GTGGTGGCTC GATTAGGGGG AGATGAGTTT
ACTGTTGTGC TCTCTTCGAT TGCGGATCAT AAAGGAGTTG AGAGAGTGGC TGAAAAAATT
CTAGCCAGAC TCTCGGAGCC TTTTAGCCTC GGCAGCGAAA CTGCGTATAT TAGTGCCAGC
ATCGGGATAA CCCTTTATCC AGATGATGCC CAAACAATAG ACAGTTTACT TAAGCATGCG
GATCAAGCCA TGTATGCAGC AAAAGGCTTG GGGAGAAATC GTTACCACTA TTTTACTCCC
TCAATGCAGG AGTATGCGAA ATACCGAATG TTGCTGATTG GAGATCTCCG TAAAGCGATA
ACTAAGCAGG AGTTTGAGGT TTATTTTCAG CCCATTGTCG ATATGAATAC CATGAAGGTG
CTAAAAGCTG AGGCGCTTAT TCGTTGGCAT CACCCTGAAA GGGGAATAAT ACCTCCCAGT
GAGTTTATCC CGGTAGCAGA GGAGACGGGG TTGATTGTCG ATATTGGAAA TTGGGTATTT
GAGGAGGCAG CTAAACAAAG TGCTTATTGG CGTGAGCAGT ATGGGGTTGA GATACAGATA
AGTATTAATA AATCACCGGT TCAGTTTCGC GATGAAAGAG GCTGTTTCGA GAGCTGGATT
AAGCGGCTTA AGGAGCTCAA GCTAGACAGT CATGGGATCT GTATCGAGAT TACTGAGGGT
TTACTACTGG ATGTTGACAG TGGGGTATCA GAGAAACTGC TAGCATATCG AGATGCGGGT
ATTCAGGTTT CATTAGATGA TTTTGGCACT GGTTACTCCT CACTCTCCTA TTTGAAAAAG
TTTGATATTG ATTACCTGAA GATTGATCAA TCTTTTACCC AAAACTTAGC ATCTGATTCA
GACGATCAAA CCTTGTGTGA AGCGATCATC GTTATGGCAC ATAAGTTGGG AATGAAGGTG
ATAGCCGAAG GTGTTGAGAC CCAGTTCCAA TTGGCCACGT TAGTGGAAGC GGGTTGTGAT
TATGGCCAAG GCTATCTTTT TTCTAAGCCA ATCCCTGCCA AGGCGTTTGA GGAGAAATAT
ATTGTTGGTC TATCAGAGTT AGCCAAGGTA TCGTCATAG
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| Protein sequence | MIFTLVQNTA LLLAMVFIYD AVPRKQRDEY LFLWQLSVGA IIGGITMTSV MASWEYSQGQ
YFDARSVILG ISGVFFGGLP TLIAVFLASI FSFYEGGVGV WFEIGMMVSA GLLGCLWRYY
CHRAVVDISN IQFYSFGMIL QCITLLWLFI LPFEMAVNTL NSVAFPTLII YPVAFLLLSS
LLARRLEMER DANIQLQDDL IFRSQFNIGN IGIAISSVDQ HWIKVNPRVC QMLKYSEKEL
LAMKWSDMTY FEDLQTGLNQ FDRMLKGEID EYEMDMRFVA KDNSIVYTHL TVACQRKNNK
VLLVISGLLD ITSQKLAESA MCASQEQLAL VLDSSELGLW DWDIKSNKVE RNTRCASLLG
CSVEELNRDE RVWINAIHRS DRVDVLHSID AHLKGETSHH SIEYRLNTFS GETIWIQDSG
KVVSKDEQGS PVRMCGTHMD ITARKRGEES LNLAASVYNN SSEAMSVQDK EGNIITINSA
FTEITGYRED EIINQHISIL QCDSSSKKTF VQMRSTIEET GRWNGEIWLK HKRGSEHIVR
LTINTILDNR GEVYRRVALF SDITEKKQAE HIIWKQANYD PLTSLPNRRM LLEYLGTELL
KSDRSKQHFA LMFLDLDFFK EVNDALGHDI GDLLLVETAK RLKGCIRESD VVARLGGDEF
TVVLSSIADH KGVERVAEKI LARLSEPFSL GSETAYISAS IGITLYPDDA QTIDSLLKHA
DQAMYAAKGL GRNRYHYFTP SMQEYAKYRM LLIGDLRKAI TKQEFEVYFQ PIVDMNTMKV
LKAEALIRWH HPERGIIPPS EFIPVAEETG LIVDIGNWVF EEAAKQSAYW REQYGVEIQI
SINKSPVQFR DERGCFESWI KRLKELKLDS HGICIEITEG LLLDVDSGVS EKLLAYRDAG
IQVSLDDFGT GYSSLSYLKK FDIDYLKIDQ SFTQNLASDS DDQTLCEAII VMAHKLGMKV
IAEGVETQFQ LATLVEAGCD YGQGYLFSKP IPAKAFEEKY IVGLSELAKV SS
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