| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3478 |
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| Symbol | |
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| ID | 6117810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4252643 |
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| End bp | 4254508 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641635031 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001761839 |
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| Protein GI | 170727813 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0957746 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0274929 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTGG ATATTTCTCA ATACCCTGTG CTTGCACAGG CTAATACCCC TGATGAGCTG
AGACAGCTCC CTCAAGCCGT GCTACCACAA CTAGCAGACG AGCTTAGAGG TTTCCTATTG
AAGTCAGTGG GCAAGTCAAG CGGCCATTTT GCCTCTGGAC TCGGCACAGT GGAACTCACT
GTGGCACTTC ATTACGTCTA TAACACGCCG TTCGATCGCC TTATCTGGGA CGTGGGCCAC
CAAGCCTATC CACATAAGAT CTTAACCGGA CGCCGTGATG CCATGCACAC CATACGTCAA
AAAGGCGGAA TACACCCCTT CCCATGGCGT GAAGAGAGCG AGTACGACAC TTTTAGCGTG
GGTCACTCAG GCACCTCTAT CAGTGCAGCG TTGGCCATGG CCGTTGCTGC AGAAAAAGAG
CAAGCTGGAC GTAAAGTCGT ATCTGTTATC GGTGATGGTG CTATGACTGG CGGCATGGTC
TTCGAAGCCA TGAACCATGC AGGCGATCTA CATAACGATA TGTTGGTCGT GCTCAACGAT
AACGAGATGT CTATCTCTGA AAATGTCGGC GCACTCAATA ACCACTTAGC TCAGCTGATG
TCGGGACGTT TCTATACCAC GATCCGTGAA AGCAGCAAAA AGGTACTCAA AGGGATGCCT
GTCATCAAGG AGATGGCTAA GCGTACCGAA GAGCACTTAA AGGGCATGGT TGTTCCCGGT
ACCATGTTTG AAGAGCTAGG CTTTAACTAC ATAGGTCCAA TCGACGGCCA TGATGTCGAT
GCCCTCGTTG AGACCATGCG CAATATGCGT AACCTGTCAG GTCCACAAAT TTTACATATC
ATGACCAAGA AAGGTCGTGG CTATGAGCCT GCGGAAAAAG ATCCTATTGG CTGGCATGCT
GTGCCTAAGT TTGACCCATC CACTTTTGAG AAACCGGCGT CAAAGCCAAG TAACCCAACC
TTCTCGCAAG TATTTGGTAA ATGGCTTTGT GATGTAGCCG AAAAAGATAA AAAAGTATTG
GGGATCACCC CAGCTATGCG TGAAGGTTCA GGCATGGTTG AGTTCTCTCA GCGTTTTCCT
AAGCAATACT TTGATGCGGC CATTGCCGAG CAGCACGCGG TGACTTTAGG TGCAGGTTTT
GCCTGTGAAG GGTTAAAACC GGTTGTCGCC ATCTACTCAA CCTTCCTGCA GCGTGGCTAT
GATCAGTTGA TCCACGATGT CGCGTTACAA AAGCTACCAG TACTCTTTGC TATCGATCGC
GGTGGTATTG TTGGTGCCGA TGGGCCAACT CACCAAGGCG CCTTTGATCT CAGCTTTATG
CGTACAGTAC CCAATATGGT CATCATGGCA CCTTCTGATG AGAATGAGTG CCGTCAGATG
CTCTATACCG GTTACTGCTA TAATGATGGC CCAACCGCAG TGCGCTACCC AAGAGGCAGT
GCTACTGGCG CTCCTCAAAT AGAAGAGATG ACTGCCCTAC CTATCGGTAA AGGTTTGATT
AAACGTCAAG GCCAAAAGGT CGCTATTCTC AATTTTGGCA CGCTATTGGC CAGTGTATTA
ACAGCAGGAG AGTCCCTTGA TGCAACAGTT GCAGATATGC GATTTGTTAA GCCACTGGAT
GTCGAGCTAA TTAAAGAGTT AGCAAACTCC CATGACGTGC TAGTCACTGT TGAAGAAAAT
GCCATCATGG GCGGTGCTGG CTCAGGTGTA CTTGAACTGC TACAACAACT TAAACAGCCA
ATGCCTGTAC TCCAGCTTGG TCTTCCAGAT GAGTTTATTA AGCATGGTGA CTCAGGTGAG
ATTATTGCTG AGCTAAAACT CGACGCCGCA GGCATTTTGG AGCAGATAGA GAGCTATTTA
GCTTAA
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| Protein sequence | MSLDISQYPV LAQANTPDEL RQLPQAVLPQ LADELRGFLL KSVGKSSGHF ASGLGTVELT
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDAMHTIRQ KGGIHPFPWR EESEYDTFSV
GHSGTSISAA LAMAVAAEKE QAGRKVVSVI GDGAMTGGMV FEAMNHAGDL HNDMLVVLND
NEMSISENVG ALNNHLAQLM SGRFYTTIRE SSKKVLKGMP VIKEMAKRTE EHLKGMVVPG
TMFEELGFNY IGPIDGHDVD ALVETMRNMR NLSGPQILHI MTKKGRGYEP AEKDPIGWHA
VPKFDPSTFE KPASKPSNPT FSQVFGKWLC DVAEKDKKVL GITPAMREGS GMVEFSQRFP
KQYFDAAIAE QHAVTLGAGF ACEGLKPVVA IYSTFLQRGY DQLIHDVALQ KLPVLFAIDR
GGIVGADGPT HQGAFDLSFM RTVPNMVIMA PSDENECRQM LYTGYCYNDG PTAVRYPRGS
ATGAPQIEEM TALPIGKGLI KRQGQKVAIL NFGTLLASVL TAGESLDATV ADMRFVKPLD
VELIKELANS HDVLVTVEEN AIMGGAGSGV LELLQQLKQP MPVLQLGLPD EFIKHGDSGE
IIAELKLDAA GILEQIESYL A
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