Gene Swoo_3467 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3467 
Symbol 
ID6117799 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4242640 
End bp4243874 
Gene Length1235 bp 
Protein Length411 aa 
Translation table11 
GC content41% 
IMG OID641635020 
Producttransposase 
Protein accessionYP_001761828 
Protein GI170727802 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.313669 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000138187 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACAACTC AAATCCCCAC CCACGTTAAG CGAACACAAC GAGATTATTC GTTAGGCTTT 
AAATTACAAG TTGTAGCAGC CGTTGAAAAA GGCGACATGA CTTATAAGCA AGCTCAAAGC
ATTTATGGTA TCCAAGGTCG TTCAACCGTA CTTACTTGGC TCAGAAAGCA CGGTAAGATG
GATTGGACTC AACCAGTGAG AATAACCATG CCTAAGACCA CCAAAGCTAA AGAAACGCCA
GCTCAAAAAA TAAAGCGCCT TGAAAAAGAG CTTGAGGATG AACATTTACG TAATCTATTA
CTCAATGAAG CCGTTGATAT CATTGATGCT GAGTATGGCG CAGGCCTAAG AAAAAAGTAC
TTAGCCAGGG AGCGAGAAGT CTTCAAAAAC AGAAAGTAAC AAGCTTAAAT CGTGCTTGCG
AGCTTCTTGG CATAACAAGA CAAGCTATCT ACCAAAGAGA AACGAGAGAA CTCTGCCGAG
CTATAGAACT GGCCCCAGTA AAAGCAATGG TGCTTGATAT CCGTCGCTTT ATGCCACGTG
TGGGTGGCAG GAAACTCTAC TTTTTACTGA AACCCAAGTT CATCGAGAAA GGAATTAAAC
TTGGGCGAGA TAACTTCTTT AGTTACTTGA AACGTGAAGG GTTATTGGTA AAACCTAAGC
ATAACTATAC CAAGACAACC CACAGTAAAC ACTGGATGAA GAAACACCCG AATTTACTCA
AAGAGTTTAC GCCTTTATCG CCTGAAGAGG TCTTTGTGAG TGACATAACT TATGTTCAAT
CAGAGCAAGG TGTTCACTAC TTGTCACTGG TGACGGATGC GTTTAGTCGT AAGATTATGG
GTTATGAACT TAGTGATGAG ATGAAAGCAA CTGATGTAGT TAAAGCCTTA AAAATGACAG
TGAATAATCG CCAATATCAA GGCCATGCAG TTCATCATTC AGACAGAGGG TTACAGTATT
GTTCAGCAGT CTATCAGTCA GCATTACAGA AAAATGGTAT CCGAGCATCA ATGACGGATG
GGTATGATTG CTATCAAAAC GCATTAGCGG AGCGAGTAAA TGGTATTTTG AAGCAAGAGT
TTTTGTTATA TCCGTGCAGC AATCTTGATG AGTTAAAGCG ACTCGTTGAA GAGTCAGTTT
TTATATACAA TGAAATGAGG CCGCACTTGA GTTTAGGTAT GAGAACACCA AATCAAGTGC
ATAAAAAAGA CCAGCAGCAA GAGCAACTGG TCTAA
 
Protein sequence
MTTQIPTHVK RTQRDYSLGF KLQVVAAVEK GDMTYKQAQS IYGIQGRSTV LTWLRKHGKM 
DWTQPVRITM PKTTKAKETP AQKIKRLEKE LEDEHLRNLL LNEAVDIIDA EYGAGLRKKV
LSQGARSLQK QKVTSLNRAC ELLGITRQAI YQRETRELCR AIELAPVKAM VLDIRRFMPR
VGGRKLYFLL KPKFIEKGIK LGRDNFFSYL KREGLLVKPK HNYTKTTHSK HWMKKHPNLL
KEFTPLSPEE VFVSDITYVQ SEQGVHYLSL VTDAFSRKIM GYELSDEMKA TDVVKALKMT
VNNRQYQGHA VHHSDRGLQY CSAVYQSALQ KNGIRASMTD GYDCYQNALA ERVNGILKQE
FLLYPCSNLD ELKRLVEESV FIYNEMRPHL SLGMRTPNQV HKKDQQQEQL V