| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3467 |
|---|
| Symbol | |
|---|
| ID | 6117799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4242640 |
|---|
| End bp | 4243874 |
|---|
| Gene Length | 1235 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641635020 |
|---|
| Product | transposase |
|---|
| Protein accession | YP_001761828 |
|---|
| Protein GI | 170727802 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2801] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.313669 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000138187 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAACTC AAATCCCCAC CCACGTTAAG CGAACACAAC GAGATTATTC GTTAGGCTTT
AAATTACAAG TTGTAGCAGC CGTTGAAAAA GGCGACATGA CTTATAAGCA AGCTCAAAGC
ATTTATGGTA TCCAAGGTCG TTCAACCGTA CTTACTTGGC TCAGAAAGCA CGGTAAGATG
GATTGGACTC AACCAGTGAG AATAACCATG CCTAAGACCA CCAAAGCTAA AGAAACGCCA
GCTCAAAAAA TAAAGCGCCT TGAAAAAGAG CTTGAGGATG AACATTTACG TAATCTATTA
CTCAATGAAG CCGTTGATAT CATTGATGCT GAGTATGGCG CAGGCCTAAG AAAAAAGTAC
TTAGCCAGGG AGCGAGAAGT CTTCAAAAAC AGAAAGTAAC AAGCTTAAAT CGTGCTTGCG
AGCTTCTTGG CATAACAAGA CAAGCTATCT ACCAAAGAGA AACGAGAGAA CTCTGCCGAG
CTATAGAACT GGCCCCAGTA AAAGCAATGG TGCTTGATAT CCGTCGCTTT ATGCCACGTG
TGGGTGGCAG GAAACTCTAC TTTTTACTGA AACCCAAGTT CATCGAGAAA GGAATTAAAC
TTGGGCGAGA TAACTTCTTT AGTTACTTGA AACGTGAAGG GTTATTGGTA AAACCTAAGC
ATAACTATAC CAAGACAACC CACAGTAAAC ACTGGATGAA GAAACACCCG AATTTACTCA
AAGAGTTTAC GCCTTTATCG CCTGAAGAGG TCTTTGTGAG TGACATAACT TATGTTCAAT
CAGAGCAAGG TGTTCACTAC TTGTCACTGG TGACGGATGC GTTTAGTCGT AAGATTATGG
GTTATGAACT TAGTGATGAG ATGAAAGCAA CTGATGTAGT TAAAGCCTTA AAAATGACAG
TGAATAATCG CCAATATCAA GGCCATGCAG TTCATCATTC AGACAGAGGG TTACAGTATT
GTTCAGCAGT CTATCAGTCA GCATTACAGA AAAATGGTAT CCGAGCATCA ATGACGGATG
GGTATGATTG CTATCAAAAC GCATTAGCGG AGCGAGTAAA TGGTATTTTG AAGCAAGAGT
TTTTGTTATA TCCGTGCAGC AATCTTGATG AGTTAAAGCG ACTCGTTGAA GAGTCAGTTT
TTATATACAA TGAAATGAGG CCGCACTTGA GTTTAGGTAT GAGAACACCA AATCAAGTGC
ATAAAAAAGA CCAGCAGCAA GAGCAACTGG TCTAA
|
|---|
| Protein sequence | MTTQIPTHVK RTQRDYSLGF KLQVVAAVEK GDMTYKQAQS IYGIQGRSTV LTWLRKHGKM
DWTQPVRITM PKTTKAKETP AQKIKRLEKE LEDEHLRNLL LNEAVDIIDA EYGAGLRKKV
LSQGARSLQK QKVTSLNRAC ELLGITRQAI YQRETRELCR AIELAPVKAM VLDIRRFMPR
VGGRKLYFLL KPKFIEKGIK LGRDNFFSYL KREGLLVKPK HNYTKTTHSK HWMKKHPNLL
KEFTPLSPEE VFVSDITYVQ SEQGVHYLSL VTDAFSRKIM GYELSDEMKA TDVVKALKMT
VNNRQYQGHA VHHSDRGLQY CSAVYQSALQ KNGIRASMTD GYDCYQNALA ERVNGILKQE
FLLYPCSNLD ELKRLVEESV FIYNEMRPHL SLGMRTPNQV HKKDQQQEQL V
|
|---|
| |