| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3466 |
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| Symbol | |
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| ID | 6117798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4241444 |
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| End bp | 4242451 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641635019 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_001761827 |
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| Protein GI | 170727801 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.954346 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000126516 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAAAAA GAACTATAAC CGTGATCCCT GGTGATGGGA TCGGACCTAG CATTATCGAT
GCAGCACTAA AAATCCTTGA TAAAGCTGGT TGTGATTTTG AATACGAGTT TGCCGATGCT
GGTTTAGCCG CCCTTGAAAA GCAAGGTGAG TTATTACCCC AGCGTACTCT CGATATGATT
GAGAAAAACC GTATCACTCT TAAAGGCCCA CTAACAACTC CGGTTGGCGA AGGCTTTACC
TCTATTAACG TATCTCTACG TAAACAGTTC AGCCTTTACG CTAACGTTCG CCCTGTCTTA
TCTTTTAAGG GCACCCAAGC TCGCTACGAC AAAATAGATA TCATCACAGT TCGTGAGAAC
ACTGAAGGCA TGTACTCAGG TCTAGGTCAA ACTGTCTCTG ACGACGGTGC TACCGCAGAA
GCGACCAGCA TCATTACTCG TCAAGGCGCT GAGCAGATCA CCACATTTGC CTATGAACTG
GCCCGTAAAG AGAACCGTAA AAAGGTCACT ATCGTACACA AAGCAAATAT CATGAAGTCG
ACCTCTGGAC TATTCCTTAA AGTCGCTCGT GAAGTCAGCT TACGCTACCC AGACATCATC
ACCGAAGAGA TGATTGTCGA TGCGACCTGC ATGAAGCTTG TCATGAATCC TGAAAACTTT
GATGTGATGG TAACCACTAA CCTGTTTGGT GATATCCTTT CCGATCTTTG TGCAGGCCTC
GTAGGCGGCC TTGGTATGGC ACCTGGTGCA AACATAGGTA AAGATGCGGC TATTTTCGAA
GCGGTACACG GCAGCGCACC TGATATCGCA GGTAAAAACT TAGCTAACCC GACATCGGTT
ATCTTAGCGT CAATTCAGAT GCTAGAGTAC TTAGGTATGG CTGATAAGGC TGAGAATATA
CGCTCAGCAG TCACAGCTGT TATCTCCGAG GGTGATCGCA CCACTCGCGA CCTTGGTGGT
ACTCACGGCA CGACTGATTT CACACAAGCA GTGATCGATC GCTTGTAA
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| Protein sequence | MSKRTITVIP GDGIGPSIID AALKILDKAG CDFEYEFADA GLAALEKQGE LLPQRTLDMI
EKNRITLKGP LTTPVGEGFT SINVSLRKQF SLYANVRPVL SFKGTQARYD KIDIITVREN
TEGMYSGLGQ TVSDDGATAE ATSIITRQGA EQITTFAYEL ARKENRKKVT IVHKANIMKS
TSGLFLKVAR EVSLRYPDII TEEMIVDATC MKLVMNPENF DVMVTTNLFG DILSDLCAGL
VGGLGMAPGA NIGKDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMADKAENI
RSAVTAVISE GDRTTRDLGG THGTTDFTQA VIDRL
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