| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3458 |
|---|
| Symbol | |
|---|
| ID | 6117790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4231252 |
|---|
| End bp | 4232808 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641635012 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001761820 |
|---|
| Protein GI | 170727794 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000037754 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGATT CAATGGCCAG TATTTCTCAG GTCAATTTAT TAAAGCAGAA ACTTCATCTC
GCTAAAGCAG CCCTAAACGA GCTTGATGAG GAGCGAAATG AGAAGTTGCA GACGCTTTTA
CAATTCATTG GCCATTTAAG TCTTGCTTGC AAAGGACAAA ATTTAGAGCT AGATAATAAG
CTGGCTAAAC TCAGGCAGCT GCTAACTAAG TTTGAAAATG TTGAGGAAGC CCTTCCTGAA
CTCGTTGAAG TCGAGCAGCT TCTTAAGCAG CAATATAACC ATGTAATGGT GCAGCTTGAA
GATAGCCGCG TCAGCTTATC TCGAGTCATA CGTCAGATCC AACGTATTGA TTCAGCGCCA
GATAAAGTCA AAAGAGAGCT CAACTACTTC AAAAAAGAGT TGGTAAAACC TTTCCATACC
TTTTGGGACT ATATCCCTAA GGTAGAGCAG CTAGTTAGTT TCTATGAAGA GATACTCGAT
GATCAACTTA AACAGGGTAC TCCCATCCTT GTTTCCCCTA AACATCGCCA GTTAGCTCAC
GAGCTTTCTC AGATGATCTC TGAGGTAGAG TTTAGAAAAC ACCAACGAGA CCAAGTGCTC
ACAGTGAAAG ATATTCTCAG TAGCGATATT GAGGTAGATA GCTTAATCGA TGCTTACCAA
ACTATCTTAA CCCTGCTGCT AGACAATATT GCTCGTGAGA AAACGGCATC TCAAGAATTT
CTCTATGCGC TTAATGACTC TCTAACTGCA GTGCGAGAAG TGGTGACGGA CTCTTACAAT
AATAATCAGC GAAGTTTTCA ACTCAAGAAA CAGTTAAATC GGGAGATCAA CTCTCGAGTC
GACAATGTTG GCGAAGCGAT TATCGACATT GACGATATCC ATAGTCTTAA GTCACAAGTG
ACCGAACAAC TTTCCGCAAT TAGAGCCTCT TTAGGCCGTA AAGAAGCGGT CGAAGAGCGT
GAACAGATCT TGTTAAGAAA ATCGATGGAG TCGATGAGAA AAGAGCTCAA TGAGCTAGGT
AAAGAAGCCA CAACATATAA AGAGCGTTTA TTTGAGCAGC AGAAACTGAA TCTACTGGAC
TCTTTGACTC AGTTGCCTAA TAGAGCTGCA CTCGAAGAGA GAATGGATCA AGAGTTTCGA
AATTTTCAAC GCCAGAAGCT TCCCCTTTGG GTTGCCGTTG CCGATATCGA TCATTTCAAA
ACCATCAATG ATAGTTTTGG GCACAGTACT GGAGATAAAA CACTCCAAGT TATTGCTATG
GCACTAAAAA ATTCCCTTAG AGATACTGAG TTCGTAGCTA GATATGGCGG TGAAGAGTTT
GTTCTTTTAA TCCCAGAAGT GAACGCCATC GATATTGAAC AACTTTTAAA CAGAGTGCGA
GAGAAAGTAA AAAGTATTCC CTTTAAGTTT AAAAATCAGA GAATTACAGT TACAGTATCT
ATAGGTGCTG CACAAATTTT AGAGAACGAG CTTATCAATG AAACCTTTGA AAGAGCAGAC
GCAGCACTCT ACCGAGCTAA ACATGAAAGC AGAGACAGAG TCATCATTGA CGTGTAA
|
|---|
| Protein sequence | MKDSMASISQ VNLLKQKLHL AKAALNELDE ERNEKLQTLL QFIGHLSLAC KGQNLELDNK
LAKLRQLLTK FENVEEALPE LVEVEQLLKQ QYNHVMVQLE DSRVSLSRVI RQIQRIDSAP
DKVKRELNYF KKELVKPFHT FWDYIPKVEQ LVSFYEEILD DQLKQGTPIL VSPKHRQLAH
ELSQMISEVE FRKHQRDQVL TVKDILSSDI EVDSLIDAYQ TILTLLLDNI AREKTASQEF
LYALNDSLTA VREVVTDSYN NNQRSFQLKK QLNREINSRV DNVGEAIIDI DDIHSLKSQV
TEQLSAIRAS LGRKEAVEER EQILLRKSME SMRKELNELG KEATTYKERL FEQQKLNLLD
SLTQLPNRAA LEERMDQEFR NFQRQKLPLW VAVADIDHFK TINDSFGHST GDKTLQVIAM
ALKNSLRDTE FVARYGGEEF VLLIPEVNAI DIEQLLNRVR EKVKSIPFKF KNQRITVTVS
IGAAQILENE LINETFERAD AALYRAKHES RDRVIIDV
|
|---|
| |