| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3456 |
|---|
| Symbol | |
|---|
| ID | 6117788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4227005 |
|---|
| End bp | 4228810 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641635010 |
|---|
| Product | peptidase M61 domain-containing protein |
|---|
| Protein accession | YP_001761818 |
|---|
| Protein GI | 170727792 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.243509 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000586563 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGAAACCTG TCATCCCATC GATTTTAACC TTAAGCCTAC TCTTTTCTCT CTCTGCTCAA
GCGGAAGTTC AGTATCGTAT AGATCTGAAT CAGTCACAGC ATCACCTTGC TCAGGTTGAG
GTCTCTTTTC CTCAATCGAG TGCCGAGCAA CTTGAAGTGC AGCTACCAGT TTGGCGCACC
GGAAAGTATC AGGTACTGCC TCTGGCTGAT GGAGTTAGAT TTTTTACCGC TAAAGATGAT
AAAGGTAACG TGCTGCCAGT AACGCGAACA GCTAGCGGAG AGTGGCAAGT TGCATTGAGT
CAACCTACTT CTGTTTCAAT CAGTTATCAG CTTTACTTGA ATAAATTAGG GCAAAGAGTG
GGGCATATCG ATGCCAGTCA TGCATTTCTC GATGCCAGTG GCACCTTTGT CTACAGTCCT
GAATTTAGGT ATGAACCGAT AGAGGTCGAG ATGAGTGTGC CCTCAAATTG GCAGAGTCAT
TCAGGCATGG ACTCCGGTGA GGAAGCGCAC ACATTTGTTG CTGACAACTA TGATGTGCTT
GTTGACTCTC CTATAGAGAC TGGCGTGAAT CAGTTGAGAC GTTTCTCTGC TGATGGTCGT
GACTATGAGT TAGTGATCTG GGGTGAGGGA AACTATGACA TCGAAAAGAT GGTCACAGAT
CTGACCAAGC TCAGTGGTGA GGCAGATGCG ATATGGGATG GTTATCCTTT TGAGCGTTAT
GTGTATATGG TCCATGCGAC CAGCGGTGCA AGTGGTGCGA CAGAGCATCT AAACTCGACC
ATTATTCAAA GACCGAGATT TAGTTACCGT GAGCGTGAGG ATTACTTAGG TTTCATTAAA
ACAGCGTCTC ATGAGTTTAT TCATACCTGG AATGTAAAAG CCTATCGACC TCAGGGCTTA
GTTCCTTATG ACTATCAAGA TGAGAATATC AGTGAGCTGT TATGGATTGC TGAAGGCTCA
ACCAGCTATT TTCAGAGTCA GTTACTGCTG CGCGCTGGTG TGATCACAGC AAAAGAGTTT
CTAGATGATC TGGCTAAGCG TATTGCAAGA AGCGAAGTAA CACCGGGGCG TGAAGTACAG
TCTGTTGCCG AAGCAAGTGC TAACCAATGG GCAAGTTCTC GCGGGGATTA TGCGATTAAC
CACAGCACCA ATATCTACTC CGAAGGCTTT CTTGTTTCTC TCGCTCTGGA CTTTTCGCTG
CTAGATGAGA CTGACTTGGA ACACTCCTAT CGCGATGTGC ACAAAGCGTT ATATCGAGAT
CATAAAATTC CGTTAGGTTA CGATGTGGAA GATGTGCAGA ATATTCTTAA GGAGTTAACG
GATGAAGACT ATAGCACTTG GTGGCAACGG CATGTGAATG CTCCGCTGAC GTTAGACTTT
CCCGATTTGC TCTCTCAAGC TGGATTAAAG ATAGGGCACG GTGAAGACTC GAAAGCCGTT
GCTTATTCTG GCATGACGGT TGAGGGGAGT TCTCTTAAGC TAAAGCAGGT GCTAAGGGAT
GGCCCTGCTT GGAATGCCGG TATTGTGCTA GGGGATGAGA TTGTGGCTAT TAACGGCCTT
AAGGTGACTG CGAGTGGTTT TGAGTCACGA ATTAAAGACT TTAAGCCTGG TGCTGAGGTG
AAGGTTACCC TGTTTAGTGA TGATAAGCTT AAATCTGTGG TGATGACCTT AGGTGAGAAG
CAATCTGGGA AGTTAACACT TGAGAGTGTG AAGAAGCCGA GCCGAAGCCA AAAGGCATTC
TTTAAGGCTT GGTCAGGTAT TGACTGGCCT TTTGATAAAA AGGGCAAGCT TAAGAGCAAT
GATTAA
|
|---|
| Protein sequence | MKPVIPSILT LSLLFSLSAQ AEVQYRIDLN QSQHHLAQVE VSFPQSSAEQ LEVQLPVWRT
GKYQVLPLAD GVRFFTAKDD KGNVLPVTRT ASGEWQVALS QPTSVSISYQ LYLNKLGQRV
GHIDASHAFL DASGTFVYSP EFRYEPIEVE MSVPSNWQSH SGMDSGEEAH TFVADNYDVL
VDSPIETGVN QLRRFSADGR DYELVIWGEG NYDIEKMVTD LTKLSGEADA IWDGYPFERY
VYMVHATSGA SGATEHLNST IIQRPRFSYR EREDYLGFIK TASHEFIHTW NVKAYRPQGL
VPYDYQDENI SELLWIAEGS TSYFQSQLLL RAGVITAKEF LDDLAKRIAR SEVTPGREVQ
SVAEASANQW ASSRGDYAIN HSTNIYSEGF LVSLALDFSL LDETDLEHSY RDVHKALYRD
HKIPLGYDVE DVQNILKELT DEDYSTWWQR HVNAPLTLDF PDLLSQAGLK IGHGEDSKAV
AYSGMTVEGS SLKLKQVLRD GPAWNAGIVL GDEIVAINGL KVTASGFESR IKDFKPGAEV
KVTLFSDDKL KSVVMTLGEK QSGKLTLESV KKPSRSQKAF FKAWSGIDWP FDKKGKLKSN
D
|
|---|
| |