| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3454 |
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| Symbol | |
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| ID | 6117786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4224596 |
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| End bp | 4225543 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641635008 |
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| Product | porin |
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| Protein accession | YP_001761816 |
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| Protein GI | 170727790 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0284932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000170236 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGAACG CTTTTTGTAA AACTCTACTC GCTTCCGCTC TTGCTACCGC TACTTTGGCT
TCTGCAAATG CAGCTGAGCC ATTAACGGTT TACGGTAAGT TGAACGTCAC GGCTCAATCT
AATGATGTAG CTGATGAGTC TGAAACAACG ATTCAAAGTA ATGCTTCACG TTTAGGTGCA
AAGGGAAGTT TTGAACTTAG TAGCTCTTTA GAAGCTTTCT ACACGATTGA ATATGAAGTG
GACACGGGTG ATGAGGCTAA GGAAAACTTT AAGGCTCGTA ACCAGTTTGT TGGCTTAAAA
GGTAATTTTG GTGCGTTCTC TGTAGGTCGT AACGACACTA TGTTGAAGCA GTCTCAAGGT
AAAATTGATC AATTCAATGA CCTATCTGCT GATTTGAAGA ACCTGTTTAA GGGTGAAAAC
CGCATTGAGC AGACTGCAAC TTACTTAACA CCAACATTTA ATGGCTTTAA AGTGGGTGTG
ACTTATGCTG CTGAAGCTGC TAAATCTCAG TATGCACAAG ATGGCTTCAG TGTTGCTGCT
ATGTATGGTG ATGCTAAGCT GAAGAAATCT CCTATCTATG CATCTATCGC ATATGATTCA
GATGTAAAAG GGTACGAAGT TGTTCGTGCT ACGGTTCAAG GTAAAGTTGC TGGCTTTAAG
CTAGGCGGTA TGTATCAGCA GCAGGAAGAG ACCTACAGCA AGACAGGTGA AGCTGTAAAT
GGCGACAGTA AAACTGGTTA CTTGTTCAGC GCTGCTTACA CTATCGATGC TGTTGTCTTA
AAGGCGCAAT TCCAAGACAT GGAAGATAAA GGTGACTCTT GGTCAATCGG TGGCGATTAC
AAGTTAGGCA AGCCAACTAA GCTGTTTGCA TTCTACTCTA GCCGTTCATA TGAAGGTGAA
GAGAATGACG ATAAGTTCTT TGGTGTTGGT TTAGAACATA AATTCTAA
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| Protein sequence | MMNAFCKTLL ASALATATLA SANAAEPLTV YGKLNVTAQS NDVADESETT IQSNASRLGA
KGSFELSSSL EAFYTIEYEV DTGDEAKENF KARNQFVGLK GNFGAFSVGR NDTMLKQSQG
KIDQFNDLSA DLKNLFKGEN RIEQTATYLT PTFNGFKVGV TYAAEAAKSQ YAQDGFSVAA
MYGDAKLKKS PIYASIAYDS DVKGYEVVRA TVQGKVAGFK LGGMYQQQEE TYSKTGEAVN
GDSKTGYLFS AAYTIDAVVL KAQFQDMEDK GDSWSIGGDY KLGKPTKLFA FYSSRSYEGE
ENDDKFFGVG LEHKF
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