Gene Swoo_3396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3396 
Symbol 
ID6117728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4154167 
End bp4155786 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content48% 
IMG OID641634951 
Productendonuclease I 
Protein accessionYP_001761759 
Protein GI170727733 
COG category[L] Replication, recombination and repair 
COG ID[COG2356] Endonuclease I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGAAA TATCAAAATT ATCTGTGGTC GCGCTACTTT CTACATTGGC ATTTAATGCC 
AATGCAAATC TATTAATCAG TGAAGCCTTA TATGATGCAC CGAATAATGA CAGCGTTGAA
GAGTACGTTG AGTTGTTTAA TGCAGGCTGT AGTAGCCTTG ATCTGAGCCA GTATCAATTG
AGTGATAATG GCAGCAGCTA TCAGCTGCAG GGCACTATAG CTTCGGGTGA GTATTTCACC
GTTGCAGCCA ATTCTGCAGG GTTTAATAGC CTGTTTAACC AGACTCCAGA TCTATCGCCA
ATGTCTTTAG CCCTGGGAAA TTCGGGTGAC TTTGTACGAT TGAAAAAAGG GGCTGAGGAG
GTTGACCTTG TTGCTTGGGA AGGCGGAGTC ACGGGATGGT CTCTCAATGT TCGCAATGTG
TCTTTGCACA GAACGACTGT GATTAACACT AAATCTGCCG CGGATTGGGC GGCCAGTGAT
AATGCTGGCA ACCCTGGCAC GGGGAGCTTA ATTGCTGACT GTGATGGTGG AGGCGATGGC
GGTGGTAGTG ATAATCAACT GGGTAATGGT CAAGCCAAGA CTGGCTTAAG TGCGGCTCAA
GGTGGGACGC TTAAATTTGT TGCCGATCTT CCCGCTGGTG CCTCAGGAGT CAGTGTGACC
ATGAGTGGTG GCACGGGGGA TGCCGATCTC TACCTTCGTC AAGGCAGTGA GCCAACATTA
AGTGTGTATG ATTGCGCGCC ATATCTGTCA GGTAATAATG AGCAGTGCAG TGTGACTAAC
CCAGTTACTG GACGCTACTA TATTAATCTT CAAGCTTATA GCGCCTTTAG TGGTGTCACT
CTCGTTTTGA ACTACACCGC AGGAACGGGT GGAGGAGACG GTTCTGGTGG TGACAATGGT
GACTATGTTT ATACAACCTA TTATGCCGAT GCCATTGGCA AAACAGGTAG CGCATTAAAA
GCCAGCCTTA ATGGCAAAAT TAAGGGGCAC ACACGTTTTA GTTACAGCCA AGTATGGGAT
GGATTGGGTT ATGCCGATGA AGATCCTGCC AACAGCGATA ATGTAATTTT GCTCTACACT
GGTCGTTCTG AGCCAAAAAC TAATCGTGCA GGCATGAGTA ACTCACTCGA TGCATGGAAT
CGTGAGCATG TTTGGGCAAA AAGCCATGGC TTTCCTAGCA GTGGCCAGCA CGGCTATACC
GATATGCATC ACCTACGTCC GTCTGATGTC ACTGTTAACA GTAGCCGAGG CAATAAAGAT
TTTGCCATGG GAGGCAGCGA GATATCAGAA GCGCCAGGTA ATCGAACTGA TTCTGATAGC
TTCGAGCCCA AAGATGAAGT GAAGGGCGAT GTCGCACGTA TGATCTTCTA TATGGATGTG
CGTTATGAGG GCAGTGATAG CAGTGGTACA CCAGACTTAA GCATTGTAAG CGGAACAACC
ACAACTGGGC AGGCGCTGCT TGGGGATCTG TGTACCTTGC TTAGCTGGCA CCAACAAGAC
CCTGTCAGTG ATTGGGAGCG TCGCCGTAAT AACCGTATTT TTGAGTGGCA AAATAACCGT
AATCCCTTTA TCGATAACAG CAGTTGGGTC GGGGATATTT ACGCGACCTC CTGTCCTTAA
 
Protein sequence
MMEISKLSVV ALLSTLAFNA NANLLISEAL YDAPNNDSVE EYVELFNAGC SSLDLSQYQL 
SDNGSSYQLQ GTIASGEYFT VAANSAGFNS LFNQTPDLSP MSLALGNSGD FVRLKKGAEE
VDLVAWEGGV TGWSLNVRNV SLHRTTVINT KSAADWAASD NAGNPGTGSL IADCDGGGDG
GGSDNQLGNG QAKTGLSAAQ GGTLKFVADL PAGASGVSVT MSGGTGDADL YLRQGSEPTL
SVYDCAPYLS GNNEQCSVTN PVTGRYYINL QAYSAFSGVT LVLNYTAGTG GGDGSGGDNG
DYVYTTYYAD AIGKTGSALK ASLNGKIKGH TRFSYSQVWD GLGYADEDPA NSDNVILLYT
GRSEPKTNRA GMSNSLDAWN REHVWAKSHG FPSSGQHGYT DMHHLRPSDV TVNSSRGNKD
FAMGGSEISE APGNRTDSDS FEPKDEVKGD VARMIFYMDV RYEGSDSSGT PDLSIVSGTT
TTGQALLGDL CTLLSWHQQD PVSDWERRRN NRIFEWQNNR NPFIDNSSWV GDIYATSCP