| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3359 |
|---|
| Symbol | |
|---|
| ID | 6117691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4116844 |
|---|
| End bp | 4118505 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641634915 |
|---|
| Product | recombination and repair protein |
|---|
| Protein accession | YP_001761723 |
|---|
| Protein GI | 170727697 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0341558 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTGCC AACTCAGCAT TAATAATTTT GCCATTGTTC GATTTCTCGA ATTGGATTTT
AAACCTGGAA TGACCAGCAT TACAGGTGAA ACAGGTGCAG GTAAATCTAT TGCAATTGAC
GCCTTGGGGC TCTGTCTTGG CAATCGTGCC GATGCCAGTA CCGTTCGCCC CGGAGCATCG
AAAGCTGAAG TCAGTGCAAG ATTTTCATTA GGTGATGTCC CCTTAGCAAA GCGTTGGCTT
GAAGATAATG ACCTTGAACT AGATCAGGAG TGTATTTTAA GGCGAACCAT CAACAGTGAT
GGACGCTCAA GAGCTTACAT AAACGGCAAC CCAGTCCCAC TCATTCAGCT TAAAAGCCTA
GGACAGCTAC TAATTGGCAT CCATGGTCAG CATGCTCATC ACGCTATGTT GAAGAGTGAG
CACCAGCTAA CTCTATTAGA CAGTTATGCT AACCACAGAC TGCTACTCGA AGCCGTTTCT
GCAGGTTATC AGCGTTGCAA ATTAATAGAG AAAGAGCTTA AGGCACTACA GCAAACTCAA
CATGAACGTA TCGCACGTAA GCAGTTACTC CAATATCAAG TTGAAGAGCT CAATGAGTTT
GCCCTCAATG AGGGAGAGTT TGAGGAGATT GAAGCTGAGC ACAAGAAACT TGCCAATGGT
ACGGCCCTTA TTCAGGCCTG CAAAAGTGAA CTCTATATTC TACAAGAGAA TGAACAGGGC
AGTGTTGAAT CACAGATAAA TGCTGGTATC ACTCAAGCTC AAGAGCTCGA AAGTTACGAT
CCTGCTCTAA AAAGCATAGT TAATATGCTT AATGATGCGC TTATCCAAAT TCAGGAAAGC
AGCAGTGAAA TAGAGCGTTA TTTAGATAAA TTAGAGCTAG ATCCTGAGTA TTTTGAGCAG
CTTGAACAGA GACTATCTAA ATTAATGCAG CTTTCACGCA AACATCAGGT ACTTCCTTGC
GCCCTCTATG AGCATCATCA GGAGCTACTA ACTGAGCTTA GCTCACTAGA TTCAGACGAA
GACGCACTCA CTCAGCTGGA GGAGCAAGTC AATGCCAGCA GAGAGAGCTA CCTTGCTCAC
GCTAAAAAGC TAAGCCAAAG CCGTAGTCGA TATGCCAAAG AGTTAGATAA AAAGGTCACT
CAATCGATAC ATGAACTCAG CATGCCAAAG GGCAAATTCT GTATCTCAGT CACCTTCAAT
GAAGAGCAGA TCTCACCTAA CGGCTGTGAC AGCATAGAGT TTCAGGTCTC GACCAATCCT
GGCCAACCAA TGCAAGCCAT CTCTAAGGTT GCATCAGGTG GTGAGCTCTC ACGTATCGGA
CTTGGCATTC AAGTGATCAC CGCGAAAAAA GTATCGACAC CGACACTGAT TTTTGACGAA
GTGGATGTGG GGATTTCGGG TCCAACTGCC GCAGTTGTAG GGCGTATGCT TCGCTCTCTT
GGAGACTCGA CTCAAGTATT TTGTGTGACC CACCTGCCTC AGGTTGCGGG TAACGGTCAC
CAACATATGT TCGTCAACAA GCACAGTAAA GCAGGTAAAA CGGAAACCTC TATGGTCTCT
TTAGATAAGC TGCAACGTAT TGAGGAGTTA GCAAGATTAC TTGGCGGCGA TGTCATCACC
AGCAATACAC TAGCCAACGC CAAAGAGCTA CTTCAGGGCT AA
|
|---|
| Protein sequence | MLCQLSINNF AIVRFLELDF KPGMTSITGE TGAGKSIAID ALGLCLGNRA DASTVRPGAS
KAEVSARFSL GDVPLAKRWL EDNDLELDQE CILRRTINSD GRSRAYINGN PVPLIQLKSL
GQLLIGIHGQ HAHHAMLKSE HQLTLLDSYA NHRLLLEAVS AGYQRCKLIE KELKALQQTQ
HERIARKQLL QYQVEELNEF ALNEGEFEEI EAEHKKLANG TALIQACKSE LYILQENEQG
SVESQINAGI TQAQELESYD PALKSIVNML NDALIQIQES SSEIERYLDK LELDPEYFEQ
LEQRLSKLMQ LSRKHQVLPC ALYEHHQELL TELSSLDSDE DALTQLEEQV NASRESYLAH
AKKLSQSRSR YAKELDKKVT QSIHELSMPK GKFCISVTFN EEQISPNGCD SIEFQVSTNP
GQPMQAISKV ASGGELSRIG LGIQVITAKK VSTPTLIFDE VDVGISGPTA AVVGRMLRSL
GDSTQVFCVT HLPQVAGNGH QHMFVNKHSK AGKTETSMVS LDKLQRIEEL ARLLGGDVIT
SNTLANAKEL LQG
|
|---|
| |