Gene Swoo_3358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3358 
Symbol 
ID6117690 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4115720 
End bp4116697 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content46% 
IMG OID641634914 
Productauxin efflux carrier 
Protein accessionYP_001761722 
Protein GI170727696 
COG category[R] General function prediction only 
COG ID[COG0679] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0125073 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCACCAA TCTTAACCCC GCTGTTTGCT GTACTCGCCA TGATGTTATT AGGCTCCTTA 
GTACAGAAAC TCAAGATTTT GCCAATTGAT ACGGATCTGG TGCTAAACCA GTACGTCTAT
TACGTGGCAT TTCCAGCCAT CATGTTAATC GCACTGGCAG AGACCCCAAT CCACGAGATA
CTACAGTGGG GTTTTATCGC TGGATACAGC TTAGCGATGC TGCTGACTTA CCTATTGGTA
GTTTTGGTTT CACACATCAC CAATAAGGGG CGTGCCGATC TGGCGGCGCT TAGGGCATTA
AATACCACAT TCGGCAATAC CGCTTTTATC GGGATCCCTC TCCTATCTAT GCTCTATCCT
GAGCAGCAAA GCGCGCTTAC CGCAGCAGCC ATTGCCAGCT TGCTCTCCGT TATCGTTTTT
GCTTTAGTGC TGGTATCAAT TGAACTTTAT CAGGAAAAAG GCGACAACAA GAGAGAGAGA
AAACAGTCCC CCTTGCTGAT TATCACACTC TCCTTAATAC AGAATCCAGT AGTCATTGGC
AGTGCTATTG GTGTATTCCT ATCTGCCATT GAGTTTAAAC TGTTCGAGCC TCTCTCCATC
ATGCTGAGAG ATATCGGTAT GACATCCAGT CCCTGTGCAC TCTTTGCTAT CGGTATGGTG
CTTGTAAAAG CGAGCGGCAA CCACGAGATC AGCCACCAGA AACCAAAATG GCTCGACTTA
ATTGCCGAGT TGAGCTGGAT AAACCTAGCT AAATTGTTCA TTCAGCCTGC GCTGGCCTAT
ATTTTATTAT CAGCGTTTGG AATTGAGGGT GACTACTTCA TTATGGGAGT CCTGTTAGCA
GCCCTTCCGA CCGCAGCTAG CGTCTATCTA CTTGCTGAAC GATATCAAGT TAAGGTAATG
GTGAGTGCCC AAGCCATTAT GTTAGGGACA CTGTTAAGCA TTGTAACCTT GCCCTTAATA
CAAAGTTTTT TGCATTAG
 
Protein sequence
MSPILTPLFA VLAMMLLGSL VQKLKILPID TDLVLNQYVY YVAFPAIMLI ALAETPIHEI 
LQWGFIAGYS LAMLLTYLLV VLVSHITNKG RADLAALRAL NTTFGNTAFI GIPLLSMLYP
EQQSALTAAA IASLLSVIVF ALVLVSIELY QEKGDNKRER KQSPLLIITL SLIQNPVVIG
SAIGVFLSAI EFKLFEPLSI MLRDIGMTSS PCALFAIGMV LVKASGNHEI SHQKPKWLDL
IAELSWINLA KLFIQPALAY ILLSAFGIEG DYFIMGVLLA ALPTAASVYL LAERYQVKVM
VSAQAIMLGT LLSIVTLPLI QSFLH