| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3353 |
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| Symbol | |
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| ID | 6117685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4108144 |
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| End bp | 4110351 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641634909 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001761717 |
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| Protein GI | 170727691 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000634706 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000162185 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTATCAG TTCGAGAAGC GCACTTTAGT GATCCTAATT TTCAACTAGA GGAGTGGGTT
AACCGCTACA TTAGTGATAC TGATGAGGCT CAAACTCTGC TCGAACTGCT CTGTCGAATC
GATACCATGG TGAGTGGGAG CCAGCAGGAT AATAGTATGC AGCTCCAACG TGCCAGAGAG
ATGATAGAGA TCTTGGCGCC ACTGAATATG GATATCGAAA CCCTGCAGGC ATCGGTTCTG
TTTGTGGTGT TTGAAGCTGG CATCATCTCT CAAGAGGATC TTGAAGAGCG ATTTGGTGCC
GAGTTAAGCC GCTTGGTCAT GAGTGTTGAA ACCATGAATG CCATCGGTGC CCTTAAGGTG
GATAATGACT CTCGCACCAG CGATGTGAAA ATAGATAATA TCCGCCGTAT GTTACTGGCG
ATGGTGGAAG ATGTGCGCGC CGTGGTCATT AAGCTTGCCG AGCGGATCTG TCTGCTACGT
GAAGTGAAAA ACTCCGATGA GGAGACGCGG GTACTGCTGG CCCGTGAGAT TGCCGATATC
TATGCGCCTC TCGCTAACCG ACTAGGTATA GGTCAACTTA AATGGGAGCT TGAGGATATC
TCTTTTCGCT ACCTGCACCC AGAGACCTAT AAAGAGATAG CCAAGCAGCT AGATGGTAAG
CGTCTGGATC GCGAAACGTT TATTGATGAT TTTGTTGCCC AGCTTCAGGC CAGATTAGAT
AAAGATCAGA TAAGGGCCAA GGTCTATGGC CGCCCTAAGC ATATCTACAG CATCTGGAAG
AAGATGAAGG GCAAAGATCT TAAGTTCGAT GAGTTATTTG ATGTTCGCGC AGTGCGGATA
GTCACCGACA GGTTGCAGGA CTGCTATGGC GCCCTTGGGG TGGTTCATAC CCTTTGGCAT
CATATCCCAC GTGAGTTTGA TGATTATGTC GCAAACCCTA AACCAAATGG TTACCAATCT
ATCCATACCA TTGTTGTAGG ACCCGAAGGG AAAACCGTCG AGATCCAGAT CCGAACTGAG
CAGATGCATG AAGATGCAGA GTTAGGTGTC GCCGCCCACT GGAAATATAA AGAGGGCGCA
GGTGGTGGTA AGCAAAGTGG CTACGAAGAG AAGATAAACT GGCTACGTAA GATCCTTCAG
TGGCAGGAAG ATGTGGCTGA AAGTGGCAAC TTAGTCGAAG AGGTGCGTAG TCAGGTATTT
GAAGACAGAG TGTATGTCTT TACGCCAAGT GGTGAAGTGG TGGATCTGCC ATCTGGGTCT
AGCGTGCTTG ATTTTGCCTA CTATATTCAC TCCCATGTGG GACATAAGTG TATCGGTGCT
AAGGTTGATG GCCGTATTGT GCCTTTTACC TACCAAGTGG AAACAGGTGA GCGTGTCGAG
ATAATCACCT CAAAGCACCC TAATCCCAAG CGTGATTGGT TAAACCCTAA CTTAGGTTAT
ATCCGTACTT CTCGTGCCCG CTCTAAAATA CAGCACTGGT TTAAGCAGCA AGATAGAGAT
AAAAATATTG TTGCTGGTAA AGAGATGTTG GAGTCTGAAC TGGCTAGAGC TGGGCTTAAG
TTAAAAGATG CCCAAAGCGC GGTTGAGCGC TTCAATCTTG TTAGTATGGA TGATCTGCTT
GCGAGTATTG GCGGTGGAGA TGTACGACTT AATCAAGTGG TTAACCATGT TCAGAGCCAG
ATGCGCATCA ATCAGGTTGA CGATGAAACC GCTGTTGAAG ATCTGGTTAA GAAGAGTGGC
ATAAAAGCTA AGAAAGAGGG CAAAGGTCAG GTCGAGGTCA ATGGCGTCGG TAATTTGATG
AGCCATATTG CGCGTTGCTG TCAGCCTGTG CCGGGTGATG AGATCTTCGG TTTCATCACT
AAAGGTCGAG GGATATCTGT GCACCGCGCC GATTGTGAGC AGGTTAAAGA GTTGATGCGA
GTTCACCCTG AGCGCACGGT CGATGTGGTG TGGGGGGAGC ATTACTCTGG TGGCTATAAG
ATACGTTTAC GCGTTATCGC CAATGACCGT TCAGGGCTGC TTAGGGATCT CACCTCAGTG
CTGGCGGCCG AAAAGTCACA TGTGATGGCG ATGAGTTCCT CATCGGATGT TAAAACTCAG
ACAGCGGCGA TTGAGTTGGA ACTTGAGCTG TATAATTTAG ATGGACTTTC ACGTGTCATA
TCTAAAATTA CCCAAGTGGA AGGGGTGAGT GAAGCCAGAC GGCTTTAA
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| Protein sequence | MVSVREAHFS DPNFQLEEWV NRYISDTDEA QTLLELLCRI DTMVSGSQQD NSMQLQRARE
MIEILAPLNM DIETLQASVL FVVFEAGIIS QEDLEERFGA ELSRLVMSVE TMNAIGALKV
DNDSRTSDVK IDNIRRMLLA MVEDVRAVVI KLAERICLLR EVKNSDEETR VLLAREIADI
YAPLANRLGI GQLKWELEDI SFRYLHPETY KEIAKQLDGK RLDRETFIDD FVAQLQARLD
KDQIRAKVYG RPKHIYSIWK KMKGKDLKFD ELFDVRAVRI VTDRLQDCYG ALGVVHTLWH
HIPREFDDYV ANPKPNGYQS IHTIVVGPEG KTVEIQIRTE QMHEDAELGV AAHWKYKEGA
GGGKQSGYEE KINWLRKILQ WQEDVAESGN LVEEVRSQVF EDRVYVFTPS GEVVDLPSGS
SVLDFAYYIH SHVGHKCIGA KVDGRIVPFT YQVETGERVE IITSKHPNPK RDWLNPNLGY
IRTSRARSKI QHWFKQQDRD KNIVAGKEML ESELARAGLK LKDAQSAVER FNLVSMDDLL
ASIGGGDVRL NQVVNHVQSQ MRINQVDDET AVEDLVKKSG IKAKKEGKGQ VEVNGVGNLM
SHIARCCQPV PGDEIFGFIT KGRGISVHRA DCEQVKELMR VHPERTVDVV WGEHYSGGYK
IRLRVIANDR SGLLRDLTSV LAAEKSHVMA MSSSSDVKTQ TAAIELELEL YNLDGLSRVI
SKITQVEGVS EARRL
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