| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3348 |
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| Symbol | ispD |
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| ID | 6117680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4102829 |
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| End bp | 4103521 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641634904 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_001761712 |
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| Protein GI | 170727686 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000512006 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000231794 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAATGATC CCCAAGATAA GGTCGTCGCT CTTGTGCCAG CGGCTGGTAT CGGCAGTCGT
ATGGGCTCTG AGATCCCAAA GCAGTATCTG GAGATTAACG GCGTACCTAT CTTAAATATC
ACATTAACAG TACTTTTAAC TCACCCTAAG ATAGATGTGG TGATAGTGGC ACTGCACCCA
GAAGATACGC TGTTTCATAC CTTATCCCAG TCATCTAATC CTAAGTTGCG CACAGTCGTG
GGTGGCGGTG AGCGAGCGGA TTCAGTGTTA GCTTGTCTAG GTGAAGTCGA AGATAATGTC
TGGGCTCTAG TGCACGATGC TGCACGTCCC TGCTTGAGCC ATGAAGATAT CGATAAACTG
CTTGCATCCC GCCTAGAGTT CCCCCAAGGC GCAATTCTAG CTGCGCCAGT TAGAGATACC
ATGAAACGTA GCAACACAGG TGGCACTATA GTGCAAACCG TGTGTAGGGA GCAGCTATGG
CACGCTTTGA CGCCTCAGCT TTTCTTAGGC TCTGCGCTGC GAGATAACTT GGCATCGGCA
CTTAGGCAGG GGGTGACAGT TACAGATGAA GCCTCGGCCA TGGAGTGGGC TGGAAATGCT
CCAGGCTTAG TATCAGGTAA TGTAAAGAAC ATTAAGATCA CTCATCCTGA CGATCTTAAA
CTAGCCAAAC TATTTTTGGC TGATGAGCTT TAA
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| Protein sequence | MNDPQDKVVA LVPAAGIGSR MGSEIPKQYL EINGVPILNI TLTVLLTHPK IDVVIVALHP
EDTLFHTLSQ SSNPKLRTVV GGGERADSVL ACLGEVEDNV WALVHDAARP CLSHEDIDKL
LASRLEFPQG AILAAPVRDT MKRSNTGGTI VQTVCREQLW HALTPQLFLG SALRDNLASA
LRQGVTVTDE ASAMEWAGNA PGLVSGNVKN IKITHPDDLK LAKLFLADEL
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