| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3346 |
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| Symbol | |
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| ID | 6117678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4101129 |
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| End bp | 4102196 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641634902 |
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| Product | tRNA pseudouridine synthase D TruD |
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| Protein accession | YP_001761710 |
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| Protein GI | 170727684 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00141322 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000295162 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTGAAC TTCATTATTT ACACGGTAAG CCTACATCTA AAGCGGATCT TCGTACTCAC
AATAGCGATT TTCAGGTTCA GGAGATATTG CCTTTTGCAC CGACGGGTGA AGGGGAGCAT
CATCTGCTTC ATATTCGTAA AGAGGGGCTC AATACCAATG ATGTTGCGAC TCTTCTATCT
GGCTTTGCAC ATGTTCATCC TAAAGAGGTG ACCTACGCTG GTCAGAAGGA TAAAAATGCT
ATCACGGAGC AGTGGTTTGG TGTGCGGATA CCTGGTAAAG AGACGCCGGA TTGGGCAAGT
CTTAATAGTG AACAATTAAC GGTTCTCTCT AGTAGTCGCC ATAGTAAAAA ACTGCGGATA
GGGGCACTGG CTGGAAATCG ATTTAGCCTA ACGCTTCGTA ATGTAACCAA GATGAATGAG
GTTATCGAGC GGCTTGAGCT GATTAAACAG ACTGGTGTGC CTAACTACTT TGGTGAACAG
CGTTTCGGTC ATGATGGTAA AAATCTTGTT TTTGGTCGTC AGATGCTGAC CGGAAGAAAA
GTAAAAGACA GAAAGAAACG CAGTATCTAC CTGTCGGCTG TTCGATCTTA TCTGTTCAAT
ATTTCTGTGT CAGCAAGGTT AGCCGAACAT GGTCTGAATA AGCTCGATGG TGATTGTGTC
ATGCTGGCTG GAACTAAAAG CTACTTTACT GCCGAGCAGT GGGATGATGC GACGATAAAG
CGTCTCGATG AGAAAGATAT TCAGCTATCG GCTCCTTTGT GGGGGAGAGG TGCTGCATTA
TCTCAAGCTG ACGCAGCCGA ATTTGAGGCA AAAGCACTAG CTGAGTTTGA ATCCGATAGA
GATGGTCTTG AACATGCTGG CTTAATCCAA GAGCGACGTA CTTTACTATC TGAGCCGCAA
CATTTGAGCT ATGAGCAAGA GGGTGATGAT ACTTTATTGA TCAAGTTTGC TCTCCCTGCA
GGCTGCTATG CCACCTCTGT GCTTAGGGAG CTTTTTGACT ATGAAGATGT CAAAGAGAGG
GAGTTTCGAG AGCGTCAGCA GGCGAGACAA GCGTCTGCAG AGTCTTAA
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| Protein sequence | MIELHYLHGK PTSKADLRTH NSDFQVQEIL PFAPTGEGEH HLLHIRKEGL NTNDVATLLS
GFAHVHPKEV TYAGQKDKNA ITEQWFGVRI PGKETPDWAS LNSEQLTVLS SSRHSKKLRI
GALAGNRFSL TLRNVTKMNE VIERLELIKQ TGVPNYFGEQ RFGHDGKNLV FGRQMLTGRK
VKDRKKRSIY LSAVRSYLFN ISVSARLAEH GLNKLDGDCV MLAGTKSYFT AEQWDDATIK
RLDEKDIQLS APLWGRGAAL SQADAAEFEA KALAEFESDR DGLEHAGLIQ ERRTLLSEPQ
HLSYEQEGDD TLLIKFALPA GCYATSVLRE LFDYEDVKER EFRERQQARQ ASAES
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