| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3342 |
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| Symbol | |
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| ID | 6117674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4097666 |
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| End bp | 4098634 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641634898 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001761706 |
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| Protein GI | 170727680 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.101192 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000171583 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGGGTCGTA AAGCAAATAC CGCAGTAGCG GAGCCGTTAG TGGACTTAGC TAAGAATGAG
TCCGATATCG AATCAACAAC AGCGAAAACA GAAGGCGCCG AACTTGAAAA TCAGGTTCAG
GATGATTTAC AAAAAAACCT AGATGCAACT CAGCTCTATC TGAGTGAAAT TGGTTTTTCC
CCCCTACTCA GTGCGGAGGA GGAGGTGTAT TTTTCACGTA AAGCTCTAAA AGGCTGTGAT
AAATCCCGAA ACCGCATGAT CGAAAGTAAT CTAAGACTTG TCGTTAAAAT TGCCCGTCGT
TATAACAATC GTGGTCTTGC TCTGCTTGAT TTGATTGAGG AGGGAAACTT AGGTCTTATT
AGAGCCGTTG AGAAATTTGA TCCTGAAAGA GGATTCAGAT TTTCTACTTA TGCGACTTGG
TGGATACGCC AGACCATAGA ACGTGCCATC ATGAATCAAA CTCGTACCAT TCGACTTCCT
ATACATGTAG TGAAAGAGTT GAATGTGTAT CTTCGTACGG CCAGAGAGTT AGCACATAAA
CTAGATCACG AGCCCACAGC TGAAGAGATC GCTGAAAAGC TAGATCTTCC TAGTGCAGAT
GTTAGTCGCA TGCTGAAGCT TAATGAGAGG ATCACCTCTG TTGACACACC TCTTGGAGGT
GATAACGACA AGGCACTTCT CGATGTGTTA GCTGATGATG ATAATGTCGG TCCTGATTAT
AAGGTTCAGG ACGAAGATAT GTCTAAGTCA GTGGTTAAAT GGTTAGATGA ACTCAACACA
AAACAGAGAG AGGTGTTAGC GCGCCGTTTT GGTTTGTTGG GCTATGAGCC TTCTACATTG
GAAAATGTAG GAAAAGAGAT TGGATTAACC AGAGAGCGAG TACGTCAAAT TCAAGTAGAA
GCTTTGAAAA GACTCAAAGA TCTGCTTAGT GCTCAAGGCT TATCTGTAGA GGCTATTTTT
AAAATTTAA
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| Protein sequence | MGRKANTAVA EPLVDLAKNE SDIESTTAKT EGAELENQVQ DDLQKNLDAT QLYLSEIGFS
PLLSAEEEVY FSRKALKGCD KSRNRMIESN LRLVVKIARR YNNRGLALLD LIEEGNLGLI
RAVEKFDPER GFRFSTYATW WIRQTIERAI MNQTRTIRLP IHVVKELNVY LRTARELAHK
LDHEPTAEEI AEKLDLPSAD VSRMLKLNER ITSVDTPLGG DNDKALLDVL ADDDNVGPDY
KVQDEDMSKS VVKWLDELNT KQREVLARRF GLLGYEPSTL ENVGKEIGLT RERVRQIQVE
ALKRLKDLLS AQGLSVEAIF KI
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