| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3338 |
|---|
| Symbol | |
|---|
| ID | 6117670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4089909 |
|---|
| End bp | 4090106 |
|---|
| Gene Length | 198 bp |
|---|
| Protein Length | 65 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641634894 |
|---|
| Product | carbon storage regulator |
|---|
| Protein accession | YP_001761702 |
|---|
| Protein GI | 170727676 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1551] Carbon storage regulator (could also regulate swarming and quorum sensing) |
|---|
| TIGRFAM ID | [TIGR00202] carbon storage regulator (csrA) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0466737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000666131 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTGATAT TGACTCGTCG TGTTGGTGAA ACACTGATGA TTGGTGATGA AGTAACTGTC
ACCGTATTAG GCGTCAAGGG TAATCAAGTG CGTATAGGTG TTAATGCGCC TAAAGAAGTT
TCGGTACATC GTGAAGAGAT TTATCAACGT ATTCAGTCTG AGAAAGCTGG GAACTCTTCA
GAAGGCGGCA ATTTTTAG
|
|---|
| Protein sequence | MLILTRRVGE TLMIGDEVTV TVLGVKGNQV RIGVNAPKEV SVHREEIYQR IQSEKAGNSS
EGGNF
|
|---|
| |