| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3329 |
|---|
| Symbol | |
|---|
| ID | 6117650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4078920 |
|---|
| End bp | 4080200 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641634874 |
|---|
| Product | sodium:dicarboxylate symporter |
|---|
| Protein accession | YP_001761693 |
|---|
| Protein GI | 170727667 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00153247 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCAAA CCATTAAGCA GATCCCCTTT TGGCAGAAAG TCTTAGCAGG CTTTATTTTA
GGTGCCAGCA TAGGTGTTAT TTTCGGCGAA TCAGCAACGG TACTCAAACC CCTTGGCGAT
CTATTTATCA GTGCAATTAA GATGTTGGTT GCCCCACTCG TCTTCTGTGC CATCGTGGTC
AGCATCACCT CGCTCGGTTC GCAAGTGAGC CTAAAGCGAC TTAGCTTTAA AACCTTAGCC
ATGTTTATGT TCACAGGCAC CTTAGCCTCA TTAATAGGGT TAACCGTAGG CTCGCTTATC
GATATGGGCG GTTCGATGGA GCTAGTAGCA ACTGAGGTAC GTGAACGTCA TGTTCCAGAG
TTTGCGCAGG TGCTGTTGGA TATGATCCCA GTTAACCCGT TTGCTTCGCT CGCAGAAGGT
AAGGTATTGC AGATCATTGT CTTTGCAGCT TTGGTTGGCA TAGCCATCAA CAAGGTAGGT
GAGAAAGCCG TTCCATTAAA ACAGGCATTC GAAGCAGGTG CAGAGGTGAT GTTCCAACTC
ACTCGCATGG TACTTCAGCT CACCCCTATC GGTGTATTTG GTTTGATGGC TTGGGTCGTG
GGTGAATATG GGCTTTCGAC TCTACTCCCT TTAGGTAAGT TTATTGCCGC TATCTACATC
GCTGCACTTA TCCATATTAT CTTTGTTTAT GGTGGCCTAA TAAAATTTGC CGCGAAACTC
AGCCCCTTGC AGTTCTTCCG TAAAGCGATG CCTGCTCAAC TGGTTGCCTT TACTACCGCA
TCAAGCTTCG GTACTTTGCC TGCAAGCACA CGTTGTACTG AGTCTATGGG CGTCTCTAAG
CAGTATGGCG CTTTTGTACT GCCTTTAGGC GCAACCATGA ATATGGATGG CTGTGGTGGT
ATCTATCCCG CTATTGCTGC CATATTTATC GCTCAAATCT ATGGTATTCC ACTGGACATG
ACCGACTACA TGCTAATTGC CGTTACCGCA ACCGTGGCAT CCGTTGGCAC TGCTGGTGTA
CCAGGCAGCG CCATGGTGAT GCTATCGGTA ACCTTAGGTG TTGTCGGCTT ACCACTTGAA
GGTATCGCCT TTATCGCTGC TATCGATCGC ATCATAGATA TGATCCGTAC CAGTACTAAC
GTAACTGGCG ATATGATGAC GGCAGTGGTG ATAGGAAAGT CTGAAGGCCA ACTGGATGAG
CAGCAGTTTT ATAACGATCA AGAGGCCGAC ACTATTGAGG AGTCGCAGCA AGCCACTACT
CAATCTAAAT CTGTGTCTTA G
|
|---|
| Protein sequence | MWQTIKQIPF WQKVLAGFIL GASIGVIFGE SATVLKPLGD LFISAIKMLV APLVFCAIVV
SITSLGSQVS LKRLSFKTLA MFMFTGTLAS LIGLTVGSLI DMGGSMELVA TEVRERHVPE
FAQVLLDMIP VNPFASLAEG KVLQIIVFAA LVGIAINKVG EKAVPLKQAF EAGAEVMFQL
TRMVLQLTPI GVFGLMAWVV GEYGLSTLLP LGKFIAAIYI AALIHIIFVY GGLIKFAAKL
SPLQFFRKAM PAQLVAFTTA SSFGTLPAST RCTESMGVSK QYGAFVLPLG ATMNMDGCGG
IYPAIAAIFI AQIYGIPLDM TDYMLIAVTA TVASVGTAGV PGSAMVMLSV TLGVVGLPLE
GIAFIAAIDR IIDMIRTSTN VTGDMMTAVV IGKSEGQLDE QQFYNDQEAD TIEESQQATT
QSKSVS
|
|---|
| |