Gene Swoo_3318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3318 
Symbol 
ID6117639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4064944 
End bp4065570 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content45% 
IMG OID641634863 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001761682 
Protein GI170727656 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0570165 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0011398 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTTTGG AGAATCGCGT GGCAGAAGCA TTGGATAAGA GAGGCGAAGC TGACAGTGAT 
CAAGCCTTAA TGTTGCAATA TATGCAGGGA GATATGTCAG CATTTGAGTC ACTGTATCAA
AAACATAAGG GCGGTTTATA TCGCTATTTC GTTCGTCAGA TAGGAGATCT TCAGTTGGCT
GAAGATCTTT ATCAAGACAC TTGGGGACGA GTGATTAAAG CGGCGGCGAG TTATGAGCCA
AGTGCGAAGT TCACCACTTG GTTATATCGA ATTGCGCATA ACCTATTGAT TGACCATGTT
AGAGCCGTAA AGCCAGTGGA TCACTTTAGT GAAGTATTTA CCGAGGAGCA GGATGCAGAC
TCCTTTTTAC CAAGTGATGA GCAAGCACCG CAAACGCAAT TTATAGCCTG GACCAAAGCT
CAGCTGCTTA AGCACTGCAT CTCACTACTG CCTACGGTAC AAAAAGAGGC TTTACTGCTC
AATATGGAAG CGGGGTTTAC GGCAGGAACC ATTGCCGAGG TGGTCGGAAC ATCACTTGAG
GCGACGAAAA GTCGTATTCG TTACGCCAAT CAAAGTTTAA AGACATGTGT CATGAACAAA
TGGCAGGAGG TTGAAAATGA AAGATGA
 
Protein sequence
MSLENRVAEA LDKRGEADSD QALMLQYMQG DMSAFESLYQ KHKGGLYRYF VRQIGDLQLA 
EDLYQDTWGR VIKAAASYEP SAKFTTWLYR IAHNLLIDHV RAVKPVDHFS EVFTEEQDAD
SFLPSDEQAP QTQFIAWTKA QLLKHCISLL PTVQKEALLL NMEAGFTAGT IAEVVGTSLE
ATKSRIRYAN QSLKTCVMNK WQEVENER