| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3314 |
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| Symbol | |
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| ID | 6117635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4055018 |
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| End bp | 4059766 |
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| Gene Length | 4749 bp |
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| Protein Length | 1582 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641634859 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001761678 |
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| Protein GI | 170727652 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.660804 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000234203 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATAAGT TGCTTCAAAT TGCCTTACTT GTGGTCATGT TACTTGCGCT TTGTGTTGTG
TTTTGGCGTT TGCGTTTATT AACGATTAAA GACAAAGAGA AATTTTCTGG TTATGCACGC
TATGGTCGTT TAGCGGGTGC AGGGGTGATT ATTTTTGTCA CCATCATTTT TCTTATCGCC
AAGATTGGAC TCATTGTTGC GGACAAAAAT GATAGAGAGA AGAGCGGCCA GTCACTATTA
GGGGTCGTTG ATGTTGCCGA TGCAGCGATT GAAGCTTGGG TATCGGGATG GGAAGATAGA
ATTTTAAGTG TCGCGTTTAA CCCCATACTT CATAGCCATG TGGAGGATCT GCTCCATGCG
CCGAGAGACA GGGAGAGCTT ACTGCTCGAC TCCGATGTGG AGTGGGCTCG CTCAGCTTAC
TTTCGTTACA GTAAACCGTT TGGCACCATG GGCTTTTTTA TTATCGCACC AGATGGGATA
AACCTTGCGT CAAACCGAGA TGCAAATTTA GGGTTGATCA ATATTGTTCA GACTAAATAC
CCGGAGCTTT TGGCCAGTGC TTTTAATGGG GAGATAGTGA TAACCCCACC GATGCACTCA
GATGTTGAGC TTGAAACTCC CGATGGTAGC TTCAATAAAA ACACTCCAAC CATGTTTGTG
ATGAGCCCTA TTGAGTTCGT TAATGGCACT ATCCCCGCAG TGCTAGCGCT GCGCATTAAT
CCCTATAAAG AGTTCTCAAA ACTGACCAGT AGTGCTCATG TGGGGGACAC TGGAGATTCA
TATTTTGTCG ATGACCGTGG TCGTTTATTA ACCGAAAGTC GTTTTAACAG CAAGCTAGTT
GACCTTGGTC TATTAAAAAA GGGGCAAACA TCAGTATTGA ATCTTACCTC TCAAATCCCC
AAAAGCAGTT ATGAAGCTGC GGGGATCACT CCTAGCTCAA GTGATCAGGT CCACCTTACT
GAGAGCGCCA AGCAGATCCG CGACCATTTA GATGGCGAGG ACTTTTCGGG TTATATCGAT
TTTAAGGGGG ATAAGGTTAT CGGTGCTTGG CGCTGGAGCG ATAAATATGG CTTTGGCATC
GTATCTGAAC TCACTCTAAA AGAGGCAAGA AAAAACTACA CCAGCTTTCA GCGGATTGTT
TACAGCATGT TTGCTGTGGT TGTTTTGCTC GTCTGTATCA TCTTTATGGG CTCAGTTTGG
GTAGGGCGCA GAATTCATGA ACAGCTCAAA GCGGTCAACG AGAAGCTTGA AGATAGAGTG
AATACCCGCA CCTTGGAGCT GCAGGAGAGG GAGACTCGTT TGTGGGATCT CTATGAGCAC
TCACCGGTGG CTTACGCCTC ATTGGACATT AAGGGCAATT TTATCAAGCA CAATCTGGCT
TTTGCTCAGT TAACGGGTCG AGAACGTGAG GAGTTTTCTC ATCTTAAGTT TAATGATGTC
ATTAAGCATA GCGAAGAGTT TACCCAAGAG TTACTTGATC ATGTGCTCTC TGGTGAGGTG
ACCTCAGATA TTAGAGTTGA GCTTTTCAGG GATGATAAAC AGAAAAAATT CGCCTCTATG
ACGGTGATCT CTAAATTAGA TGAGCAGGGC AAGCTAGAGG ATATTCGTCT TTCACTGCTG
GATGTGACTC AAAGAGAGAT GGTACGAAAA GAGCTGAAAT ATAATCAAGC CCAGTTTAGC
TCTATGGTCA GTAATATCCA AGGTGCTGTA TTTAGATATA GATTAAGTGA AGATTGGCGC
ACCTCCGAGA TGCTCTATAC CAGTCCCAAG ATGGCTCAGA TAACTGGTTA TGAGATTGAG
TTTTTCTTAG GGGATGCCCC TCAAGTTAAT CTGTTTGATC TGATACACCC AGCCGATGTG
GATGAGTTTA ATCTGCAGAT GGAGTCCAGT CGATTAGATG GTTCCTCTTT AAGAGCCGAC
GTTAGAATAA TTAACGCTTC AAATATTGAA CGCTATGTGC AGTTTCGTGC GCTTTTCTCT
GTTAATGCTT CCGGGAGTGC TGAATATCTT GATGTCAGTA TTTTTGATAT TACCGAGCAG
AAAAGCAGTG AATTGAAGCT ACATGAATCA GAGGAGAGAC TCGATGTCGC CTCCAGTAGT
GCCCAGCTTG GTATGTGGGA CTCTTTTCCG TTAGAGAGCA AGGTGCTGAT TAACCATGTC
TGCGTCACGA TGCTGGGTTA TAAGATGGAT GATCTCTGCA TCAGTAATGA TAAGTGGTCT
GAATTAAAGA GTGGTAACAG GACTTGGCTT GGTTTGATCC ACCCCGATGA CCGTGAGCTT
TATACTGAGT TAATTGAAGC TCATATTACT GGGAATGAAG AGATCTATCG TCAAGAGCTT
AGGCTACTTA ATCATTCGGG CCAATATGAG TGGATGTTAA GTGTCGGCAA GGTATTTGAA
CGTGATAATC AAGGGCGGGC GATAAGAATA AGCGGTATCA ATGTGAATAT TGATGCCGCC
AAACAGTTGG AGAAGGAGCT GGAGCTGTCC AAGCAGAAGG CTGACAGTGC CAATCGGGCT
AAGAGTGACT TTCTTGCCAA CATGAGCCAT GAGATAAGAA CTCCGATGAA CGCCATTATT
GGTATGTCTC ATCTTGCGTT AGAGACAGAT CTTGATCGAA AGCAGCGAAA CTATATCGAT
AAAGTGAACC GTTCAGCTGA GTCTTTACTG GGGATTATTA ATGACATTCT CGATTTTTCT
AAGATAGAGG CGGGTAAGTT AGATATTGAA AAGATTGACT TCTCTTTGGA GGATGTCCTT
GAAGATGTCA GCGATCTTGT CGGTTTTAAA GCAAAAGATA AAGGGATTGA ACTGCTTTTT
AATACTGAAT CCTCTTTACC CTTCTATTTT AACGGTGATC CTCTGCGTTT ATCGCAAGTG
CTCACTAACT TGAGTAATAA TGCGATTAAG TTTACGGAGC AGGGAGAGGT ACAGATAAAG
GTGTACGCTC ACTCCATCAA TGAAACCAAT ATAGAGCTGG CCTTTGAGAT CTCAGACACA
GGTATTGGGA TGTCAAAAGA GCAGCAGTTG AAGCTGTTTA AGGCATTTTC ACAGGCTGAC
TCATCCACGA CCCGTAAGCA TGGCGGCACG GGTTTAGGCT TAGTGATCAG TCAAAACTTG
GTCGAGCTTA TGGGGGGAGT TATCAGCTTT GAGAGTGAGG AGGGCGTGGG AAGTTGTTTC
AAGTTTATTC TGCCTTTAAC ACCAGCTTCA GCGCTTGAAA CTCAGAGCTT CGATAAGGTT
TCCCTTGAAA ATATTCATGT GCTTGTCGTG GATGATAATG CCAATGCTAG GGAGATCTTT
GCCAATATGT TAGAGGGGCA TGGGATCTCA TACTCGTTAG CGGCGAATGG CCAGCAAGCG
ATGGCATTAC TTGAGCAGGA GGGGGCCTCA TACCAAGTGG TGCTTCTAGA TTGGAAGATG
CCTGGCATGA GTGGTGTCGA TACGGCTAGG GCTATCCAAG AGTCGTCGTT AATTACAGAA
AAACCTAAAG TGTTAATGGT AACCGCCTAT GGTAGAGAGG AGTTAATCAA TCTATCCCAA
GGGGTCAATT TTGCTGGAGT GCTAACCAAG CCTATTACCT CCTCACACCT GCTTAATACC
ATACTTGAGT CCTTAGGTAG GGAGGTCAAT AAACGCAGTA AGAGCTCGGC GAAAGAGATG
ATGTACCGCG CTGCGTTAAA GCAGCTTGCA GGAGCGCATA TCTTAATTGC CGAAGATAAC
GATTTAAATA GAGAGCTGAT TGTCGACCTG CTCTCAAATA ACCAGATCAC CTCCGTAGTG
GCTATGAATG GACAGGAGGC TATCGATTGT CTGCTCAAGG AGTCATTTGA TGGTGTGTTA
ATGGATTGCC AGATGCCCGT CATGGATGGA TACACAGCAA CGAAGAAGAT AAGAGAAGTA
GAGGGGTTAT CAGCTTTGCC AATCATAGCC ATGACAGCTA ACGCAATGGC TGGAGACAGA
GAAAAGGCTA TTGGTTGTGG CATGACAGAT CACATCTCAA AGCCGATAAA CGTTCAAAAT
ACCTTTATCA CAATGGCGAA CTCTATTAAG CCGAAACACC CAGTGAAAGT TCAAGATGAG
GTAGCGGATA ATGCTCACAA GGAGCTGGGA TGTGATATCG AGATGCTCCA GTTTAATAGT
ATTGATACCA AGTCTGGCTT AGAGCGAACA CAAGGGGATG GTGCGCTGTA CCGTAAAGTG
CTTAAGCGCT TTAACGGCTC AACAGACTCA TTTGAAAGTG ATTTAATGCA GGCATTAACC
CAGACCGATC TTATTGCTGC AGAGAGAGTT GTCCATACCC TAAAAGGGGT TGCAGGCACC
ATAGGGGCGA CAGATTTGGC CATTGAGGCT GCCCAATTAG AGTCTTGTGT TAAGCAGCGT
AGCGTCGCTG ACACTGAGAT GGTGGCGCTT AACGCTCAGC TTGAAAAGGT CAAAGCTCAA
TTAAAAGAGG TTAGAAGTGA GCTGGCTGAT TATTTTGATG GCTTCAGTGA AGCGGTGGCG
AGTCAGCCAT CAGAGGATAA CTTGTCAGAT GATGAAGTGA GAGATAAGTT GAACAGATTA
GATACCATGT TAGAGAACTA TGAGGCTGAA GTGGGAGACT TTATCTTCGA TGAACTATAT
TTTCTAAAAG GTGGGAGTTT AGATAAAGCG TTTAATGAGC TGAGTAAGCA GATAGAAAAC
TATGATTTTG AAGCTGCAAG AGCTGTGGTT GCCTCAATGT TATCGTCACT AAATGAGAAG
CTAGATTAA
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| Protein sequence | MDKLLQIALL VVMLLALCVV FWRLRLLTIK DKEKFSGYAR YGRLAGAGVI IFVTIIFLIA
KIGLIVADKN DREKSGQSLL GVVDVADAAI EAWVSGWEDR ILSVAFNPIL HSHVEDLLHA
PRDRESLLLD SDVEWARSAY FRYSKPFGTM GFFIIAPDGI NLASNRDANL GLINIVQTKY
PELLASAFNG EIVITPPMHS DVELETPDGS FNKNTPTMFV MSPIEFVNGT IPAVLALRIN
PYKEFSKLTS SAHVGDTGDS YFVDDRGRLL TESRFNSKLV DLGLLKKGQT SVLNLTSQIP
KSSYEAAGIT PSSSDQVHLT ESAKQIRDHL DGEDFSGYID FKGDKVIGAW RWSDKYGFGI
VSELTLKEAR KNYTSFQRIV YSMFAVVVLL VCIIFMGSVW VGRRIHEQLK AVNEKLEDRV
NTRTLELQER ETRLWDLYEH SPVAYASLDI KGNFIKHNLA FAQLTGRERE EFSHLKFNDV
IKHSEEFTQE LLDHVLSGEV TSDIRVELFR DDKQKKFASM TVISKLDEQG KLEDIRLSLL
DVTQREMVRK ELKYNQAQFS SMVSNIQGAV FRYRLSEDWR TSEMLYTSPK MAQITGYEIE
FFLGDAPQVN LFDLIHPADV DEFNLQMESS RLDGSSLRAD VRIINASNIE RYVQFRALFS
VNASGSAEYL DVSIFDITEQ KSSELKLHES EERLDVASSS AQLGMWDSFP LESKVLINHV
CVTMLGYKMD DLCISNDKWS ELKSGNRTWL GLIHPDDREL YTELIEAHIT GNEEIYRQEL
RLLNHSGQYE WMLSVGKVFE RDNQGRAIRI SGINVNIDAA KQLEKELELS KQKADSANRA
KSDFLANMSH EIRTPMNAII GMSHLALETD LDRKQRNYID KVNRSAESLL GIINDILDFS
KIEAGKLDIE KIDFSLEDVL EDVSDLVGFK AKDKGIELLF NTESSLPFYF NGDPLRLSQV
LTNLSNNAIK FTEQGEVQIK VYAHSINETN IELAFEISDT GIGMSKEQQL KLFKAFSQAD
SSTTRKHGGT GLGLVISQNL VELMGGVISF ESEEGVGSCF KFILPLTPAS ALETQSFDKV
SLENIHVLVV DDNANAREIF ANMLEGHGIS YSLAANGQQA MALLEQEGAS YQVVLLDWKM
PGMSGVDTAR AIQESSLITE KPKVLMVTAY GREELINLSQ GVNFAGVLTK PITSSHLLNT
ILESLGREVN KRSKSSAKEM MYRAALKQLA GAHILIAEDN DLNRELIVDL LSNNQITSVV
AMNGQEAIDC LLKESFDGVL MDCQMPVMDG YTATKKIREV EGLSALPIIA MTANAMAGDR
EKAIGCGMTD HISKPINVQN TFITMANSIK PKHPVKVQDE VADNAHKELG CDIEMLQFNS
IDTKSGLERT QGDGALYRKV LKRFNGSTDS FESDLMQALT QTDLIAAERV VHTLKGVAGT
IGATDLAIEA AQLESCVKQR SVADTEMVAL NAQLEKVKAQ LKEVRSELAD YFDGFSEAVA
SQPSEDNLSD DEVRDKLNRL DTMLENYEAE VGDFIFDELY FLKGGSLDKA FNELSKQIEN
YDFEAARAVV ASMLSSLNEK LD
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