| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3289 |
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| Symbol | |
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| ID | 6117609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4033223 |
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| End bp | 4034080 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641634834 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001761654 |
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| Protein GI | 170727628 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.629665 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000299463 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAACAATG ATAATCAGTT TGATGAGAAG TCTGTAGACT CCTCTGCTAA TAAAGAGATC
GAAGCTGGTG TTAATGAAGC AGAGCTTCAT GATGAAACAG CACCTGAGAT AGAGATACTA
TTTGAAGATG ACGATATTGT TGTGATCCAT AAGCCTGCTG GGTTATTGGT GCACAGATCT
TATCTTGCGC GGCGTGAGCG CTTTTTTGCA ATGCAGATGA CTCGCGATAA AGTGGGGTGT
CATGTTTTTC CTGTTCACCG TTTAGATAGA CCTACGTCAG GTATTTTGCT ATTCGCAAAA
AGCAGTGAGA TGGCAAATAA CCTGTGTGAG CAGTTTTCGG CTAAAACGGT AGAAAAACAA
TATTTGGCCA TTGTCAGAGG AAATATGCAT GAGGCTGACA CTTTAGATTA TGCCCTTAAG
GTCGAGCTTG ATGATCATGG TGATAAAGAT GTGGACCCCA ATAAAGCGGC ACAAGAAGCG
GTAACAAGTT ATCAGCCTCT GCTTAATACC GAGATCCCTT TTCCATCTGG GCGATATGCA
ACTAGCCGAT ACGCTATGGT CAAGCTGATT CCACACACGG GCCGAAAACA CCAATTAAGA
CGCCATATGG CACACCTTAG ACATCCTATT GTGGGTGATA CGACTCATGG TGATGGTAAA
CAGAATAAAT TTTTTAGAGA ACATTTTGCT ATAAACCGTT TGTGGTTGAT AGCAAAAAGC
CTTGCATTCG ATCATCCAAG AAGCGGTGAA AGAATCACGA TAGAAACTGA GCTTGAAAAG
GAGTGGTTGA CTCTGTTTGA GGCCTTTGGT TGGGATGATG AGGTGTTAGC CTCCGAGACC
TCCACCTTAA TTGTTTAG
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| Protein sequence | MNNDNQFDEK SVDSSANKEI EAGVNEAELH DETAPEIEIL FEDDDIVVIH KPAGLLVHRS
YLARRERFFA MQMTRDKVGC HVFPVHRLDR PTSGILLFAK SSEMANNLCE QFSAKTVEKQ
YLAIVRGNMH EADTLDYALK VELDDHGDKD VDPNKAAQEA VTSYQPLLNT EIPFPSGRYA
TSRYAMVKLI PHTGRKHQLR RHMAHLRHPI VGDTTHGDGK QNKFFREHFA INRLWLIAKS
LAFDHPRSGE RITIETELEK EWLTLFEAFG WDDEVLASET STLIV
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