| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3284 |
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| Symbol | dapD |
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| ID | 6117604 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 4028317 |
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| End bp | 4029141 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641634829 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001761649 |
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| Protein GI | 170727623 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.253156 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000186096 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAGGCTT TACGCCAACG CATAGAAGCA GCTTTTGAAG TGCGCGCAGA GATTAGTCCA
AGTACAGTGG AGCCAAGTGT ACGTGCAGAT GTTGAGAAAG CAATTAACAT GCTGGACACT
GGTGAAGCTA GAGTTGCTGA AAAGATTGAT GGGCAATGGC ATGTTCACCA ATGGCTGAAG
AAAGCCGTAT TACTCTCATT TCGTATCTTC GATAATGCTG TTATCGATGG AGCAGAAACT
AAGTACTTCG ATAAAGTACC AATGAAGTTT GCCGATTACG ATGAAGCACG CTTCAGAGAG
GAGGCGATTC GCGTCGTCCC ACCAGCAGCC GTCCGTAAAG GCTCTTTTAT CGGCAAAAAT
ACCGTATTGA TGCCTTCATA TGTCAACCTT GGAGCGTATG TTGATGAAGG CTCTATGGTC
GATACATGGG CGACAGTTGG CTCATGTGCT CAGATAGGTA AAAATGTGCA CCTTTCTGGT
GGCGTTGGCA TAGGCGGCGT ATTAGAGCCA CTACAGGCCG GACCTACCAT TATTGAAGAT
AACTGCTTTA TCGGAGCACG CTCAGAAGTC GTTGAAGGTG TAATTGTAGA AGAGGGTAGC
GTTATCTCTA TGGGCGTATA CCTAGGACAA AGTACACGTA TTTTTGATCG CGAAACGGGT
GAAATTCACT ACGGACGAGT TCCTGCAGGC TCTGTCGTCG TATCAGGTAC CCTTCCCTCT
AAATGCGGAA CTTATAACCT GTACGCTGCA ATAATAGTGA AGAAAGTCGA CGCTAAAACT
CGCGCCAAAG TGGGGATCAA CGAACTACTC AGAATCGTTG ACTAA
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| Protein sequence | MEALRQRIEA AFEVRAEISP STVEPSVRAD VEKAINMLDT GEARVAEKID GQWHVHQWLK
KAVLLSFRIF DNAVIDGAET KYFDKVPMKF ADYDEARFRE EAIRVVPPAA VRKGSFIGKN
TVLMPSYVNL GAYVDEGSMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED
NCFIGARSEV VEGVIVEEGS VISMGVYLGQ STRIFDRETG EIHYGRVPAG SVVVSGTLPS
KCGTYNLYAA IIVKKVDAKT RAKVGINELL RIVD
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