| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3275 |
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| Symbol | |
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| ID | 6117594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4018257 |
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| End bp | 4019444 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641634819 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_001761640 |
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| Protein GI | 170727614 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000693847 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00039641 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAAGCA TGGTGATTTT GGGAGCGACT GGCTCCATAG GCGCTAGCAC GCTCAGCGTT
ATTGCCAGTA ACCCTGAAAC ATATTCAGTT TACGCCTTAG TCGCTAATAC TAATGTTGAT
AAGATGATGG CTCTATGCGA ACAGTACAGA CCCAAAGTCG CGCATATGGT CGATGAGCAG
GCTGCAAAAT CTTTGCAGGA ACGCCTGTCA CCAAGTTTAA AGATTGAGGT GACAACAGGG
GAGTCGCAGC TTGAAAGTAT TGTGACTTCA AGCTGTGTAG ATACTGTGAT GGCTGCGATT
GTTGGGGCGG CAGGATTGGT GCCTACGTTA GCAGCGGTTA AAGCGGGTAA ACGTGTACTC
TTGGCGAATA AAGAGTCATT GGTGATGTCC GGTCGTCTCT TTATTGAAGA GATGAAAAAG
TCTGGTGCTC AAGTACTGCC TGTTGACAGT GAACATAACG CTATTTTTCA AGCACTCCCT
GAGCCAGTAC AGCAAGAGAT CGGTTTCTGT GATTTAGATG AAGCTGGGAT CTCCCATATC
TTGCTTACGG GATCTGGAGG ACCGTTCTTG ACATCACCGT TAAGCTCATT GCCTCAGATG
ACACCTGCTC AGGCTTGTAA ACATCCTAAT TGGTCCATGG GGCGCAAGAT CTCTGTTGAT
TCAGCCAGTA TGATGAATAA GGGCCTTGAG TATATTGAGG CGCGCTGGCT ATTTAATGCA
TCGGCTGAGC AACTGAAAGT AGTTATTCAC CCTCAAAGCG TTATCCACTC GATGGTTCAG
TACCGTGATG GCTCTGTTAT CGCTCAGTTA GGCAACCCGG ATATGCGTAC ACCGATTGCA
CATTGCATGT CCTATCCACA AAGAATTAAC TCTGGAGTTG AACCTTTAGA CTTTTTCAAA
GTCGGACAGT TAAGCTTCTT AGAACCTGAC TTTACTCGTT TTCCCTGTTT GGCATTAGCA
ATCGATGCTT GTAACCAAGG ACAGGAAGCC ACCACAATAT TAAATGCAGC CAATGAAATT
TCAGTTGCCG CGTTTTTAGA TAATAAAATT AAGTTTACCG ATATTGCTAA AGTGAATGAA
ACCTGTTTAA GTCAGGTTGC AAAACAAGCA CTAAACAGTA TTGATGACAT TTTAGCATTG
GATGTACAGA CTCGTACCTA TGCTTCAGAA TGGGTAAATA AGATTTAA
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| Protein sequence | MQSMVILGAT GSIGASTLSV IASNPETYSV YALVANTNVD KMMALCEQYR PKVAHMVDEQ
AAKSLQERLS PSLKIEVTTG ESQLESIVTS SCVDTVMAAI VGAAGLVPTL AAVKAGKRVL
LANKESLVMS GRLFIEEMKK SGAQVLPVDS EHNAIFQALP EPVQQEIGFC DLDEAGISHI
LLTGSGGPFL TSPLSSLPQM TPAQACKHPN WSMGRKISVD SASMMNKGLE YIEARWLFNA
SAEQLKVVIH PQSVIHSMVQ YRDGSVIAQL GNPDMRTPIA HCMSYPQRIN SGVEPLDFFK
VGQLSFLEPD FTRFPCLALA IDACNQGQEA TTILNAANEI SVAAFLDNKI KFTDIAKVNE
TCLSQVAKQA LNSIDDILAL DVQTRTYASE WVNKI
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