Gene Swoo_3273 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3273 
Symbol 
ID6117592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4014337 
End bp4016820 
Gene Length2484 bp 
Protein Length827 aa 
Translation table11 
GC content43% 
IMG OID641634817 
Productouter membrane protein assembly complex, YaeT protein 
Protein accessionYP_001761638 
Protein GI170727612 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4775] Outer membrane protein/protective antigen OMA87 
TIGRFAM ID[TIGR03303] outer membrane protein assembly complex, YaeT protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000281786 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00225371 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGATTGA ATAAACTTTT TGCCTCGATG GTATTAGTCG GTGCGTCTTT ATCAGGGAAC 
GGTTGGGCAG ATACATTCCA GCCTTTTGAA GTCACAGATA TTCAAGTTCA AGGTCTACAG
CGTGTAGCTC TTGGTGCAGC CTTACTGACA ATTCCAGTCA AGGTTGGTGA TACTGTTGAT
GAACTTAAAC TTCGTCAAGC GATCAAAAGC TTGTACGCCT CCACTAACTT TGAACATATT
GAAGTGAGTC GGGATGGTGG GGTGTTGGTT GTTACGGTCA AAGAGAGACC AACAATCAGT
GCCGTTACTT TCGAAGGCAA CAAAGATATT AAAGATGAGC AGCTGCAGGA GAGCTTAGAT
GGATCCGGAG TGAAAACCGG TGAAGCACTC GACCGCACTA TGCTGTCTGG TATCGAGAAA
AGCCTACAAG ATTTTTACTA TGGTGTTGGT AAGTATGGCG CCAAAGTAGA AGCTCAAGTC
ATTAATTTGC CTCGTAATCG TGTTGAGTTA AAATTCAACT TTACCGAAGG TTTAGCTGCT
GAAATTAAGC AGATTAACTT TGTTGGTAAT GAAGTCTTCA GTGATGCAGA ACTGACAGGC
ATGCTTGAGT TAAAAGACTT TGTGGCATGG TGGGATCTAT TTGGTGAGCG TCGCTACCAG
AAACAAAAAC TGCAAGCAGA TCTTGAAACC GTCAAATCTT TCTATCACAA CCGTGGTTAT
ATCCGCTTTG ATGTGACCTC TACGCAAGTC ACCATGACGC CGGATCGTAA AGGGCTCTAC
ATCACGATTA ACGTCAATGA AGGTGAGCCG TATAAGGTTA AAGAGGTTAA CTTAACTGGT
GACCTGATGG GACGTGAGAA GCTGATGAAA GCGATCCTTC CGATTAAAGC TGGGGATACC
TATAATGGCG CCGATGTGAC CTTTGCCGAA GAGATGTATG GCAAGTACCT TGGCCGTTTT
GGTTACGCTT ATCCAGAAGT GAAAACTTTC CCAGAAATTG ATGATGAGAC CAAAGAGGTC
AGTCTGAACG TTAACATCAA GCCGGGTAAA CGAGTTTATG TTCGTAGCAT TAATTTTTCT
GGTAACCAGG TAACTAAAGA TGAGGTGATG CGCCGTGAGC TTCGTCAGAT GGAAGGCGCT
TGGTTAAACT CAGCTCAAGT TGAGCAATCA AAAGCTCGTC TGAATCGACT TGGTTATTTT
GAAACTGTTG ATACTGAAAC GGTTCAAGTT CCGGGTACTG ACGATCTAGT TGATGTTGCC
TTTAATGTGA AAGAGCAGCC ATCAGGCTCC TTTAATGCGG GTATTGGTTA CGGTACTGAA
TCGGGCATGA GCCTGCAGTT TGGTGTGCAG CAGAGCAACT TCTTAGGTAC AGGTAATCAG
GCGGGTATTA ACTTAAATAC CAACAAGTAT TCTAAGAACG TTAATCTCTC TTTCACCGAT
CCCTACTTTA CTAAAGATGG GGTGAGCTTA GGTGGAAGCA TCTACTGGAA TGAGTTTGAT
GCAGATGAAG CGAACTTAGA AGCTTATAAA AACAGCTCAT ATGGTATTGC GGTTAACTCA
GGTTTCCCGA TTAACGAATA TAACCGTATC AATGGTGGTT TAGGCTACCG TCATAACGAA
ATTTCTGAAA TTTCAGCTTA TGAGCAAGCA CTGCGTTTCT ATAATATCTA TCGTGATAGT
GACGATCCTA ATGCATCTCT CTCTTTCGAT AACTTTGAAG CAAACTTGGG CTGGTACCGT
AGTACGCTAA ACCGAGGGAC TTTTCCATCG GATGGTTCAT CACAGCGTTT AAGTACAAAA
ATGACCGTTC CTGGTTCAGA TCTGCAGTAT TTTAAAGCCG ATTTAGATAC TAGCTTCTAT
TTCCCAATCA CTCGAAATCA CAGCTTTGTG CTATTAACTA AGGCACGCTT GGGTTACGGT
AATGGTTATG GTCAGTTTGA AGATAACGAT CAGATCTTAC CATTTTGGGA GAACTATTAC
TCAGGTGGTA GTAGCTCACT GCGTGGATTT AAGTCTAACT CAGTGGGGCC ACGTTCATTT
TATTTGACTC GCGGTTTAGA GCCTTGCTCA CCAGATCCAT CGGGTGATGG TTGTTACTTG
CCAGGTGATC CTAACCAGAT CCAGGTGAGT TCAGGTCGCT CTATTGGTGG TAATGCGATT
GCAACTGCTA GCATGGAGCT TATAGTACCG ACGCCTTTCT TAGATGAGGC ATATACAAAC
TCAGTACGAA CCAGTTTCTT CCTTGATGCG GGTAACGTAT GGGACACCGA GTTTGATTAT
GATTCATATA GATACCTTCC GGCTCACGAA TTTGATAAGC TAGAGGATTA CTCAGATCCG
GCTCGGATCC GTGCCTCATG GGGTATGAGT GTACAATGGT TGTCACCGAT GGGACCTATG
GTGTTTAGCC TGGCATGGCC ACTTAAAGAG TATGAGGATG ATCAAACTGA GATCTTCTCA
TTCAATATTG GTAAAACTTT CTAA
 
Protein sequence
MRLNKLFASM VLVGASLSGN GWADTFQPFE VTDIQVQGLQ RVALGAALLT IPVKVGDTVD 
ELKLRQAIKS LYASTNFEHI EVSRDGGVLV VTVKERPTIS AVTFEGNKDI KDEQLQESLD
GSGVKTGEAL DRTMLSGIEK SLQDFYYGVG KYGAKVEAQV INLPRNRVEL KFNFTEGLAA
EIKQINFVGN EVFSDAELTG MLELKDFVAW WDLFGERRYQ KQKLQADLET VKSFYHNRGY
IRFDVTSTQV TMTPDRKGLY ITINVNEGEP YKVKEVNLTG DLMGREKLMK AILPIKAGDT
YNGADVTFAE EMYGKYLGRF GYAYPEVKTF PEIDDETKEV SLNVNIKPGK RVYVRSINFS
GNQVTKDEVM RRELRQMEGA WLNSAQVEQS KARLNRLGYF ETVDTETVQV PGTDDLVDVA
FNVKEQPSGS FNAGIGYGTE SGMSLQFGVQ QSNFLGTGNQ AGINLNTNKY SKNVNLSFTD
PYFTKDGVSL GGSIYWNEFD ADEANLEAYK NSSYGIAVNS GFPINEYNRI NGGLGYRHNE
ISEISAYEQA LRFYNIYRDS DDPNASLSFD NFEANLGWYR STLNRGTFPS DGSSQRLSTK
MTVPGSDLQY FKADLDTSFY FPITRNHSFV LLTKARLGYG NGYGQFEDND QILPFWENYY
SGGSSSLRGF KSNSVGPRSF YLTRGLEPCS PDPSGDGCYL PGDPNQIQVS SGRSIGGNAI
ATASMELIVP TPFLDEAYTN SVRTSFFLDA GNVWDTEFDY DSYRYLPAHE FDKLEDYSDP
ARIRASWGMS VQWLSPMGPM VFSLAWPLKE YEDDQTEIFS FNIGKTF