Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3273 |
Symbol | |
ID | 6117592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 4014337 |
End bp | 4016820 |
Gene Length | 2484 bp |
Protein Length | 827 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641634817 |
Product | outer membrane protein assembly complex, YaeT protein |
Protein accession | YP_001761638 |
Protein GI | 170727612 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000281786 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00225371 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGATTGA ATAAACTTTT TGCCTCGATG GTATTAGTCG GTGCGTCTTT ATCAGGGAAC GGTTGGGCAG ATACATTCCA GCCTTTTGAA GTCACAGATA TTCAAGTTCA AGGTCTACAG CGTGTAGCTC TTGGTGCAGC CTTACTGACA ATTCCAGTCA AGGTTGGTGA TACTGTTGAT GAACTTAAAC TTCGTCAAGC GATCAAAAGC TTGTACGCCT CCACTAACTT TGAACATATT GAAGTGAGTC GGGATGGTGG GGTGTTGGTT GTTACGGTCA AAGAGAGACC AACAATCAGT GCCGTTACTT TCGAAGGCAA CAAAGATATT AAAGATGAGC AGCTGCAGGA GAGCTTAGAT GGATCCGGAG TGAAAACCGG TGAAGCACTC GACCGCACTA TGCTGTCTGG TATCGAGAAA AGCCTACAAG ATTTTTACTA TGGTGTTGGT AAGTATGGCG CCAAAGTAGA AGCTCAAGTC ATTAATTTGC CTCGTAATCG TGTTGAGTTA AAATTCAACT TTACCGAAGG TTTAGCTGCT GAAATTAAGC AGATTAACTT TGTTGGTAAT GAAGTCTTCA GTGATGCAGA ACTGACAGGC ATGCTTGAGT TAAAAGACTT TGTGGCATGG TGGGATCTAT TTGGTGAGCG TCGCTACCAG AAACAAAAAC TGCAAGCAGA TCTTGAAACC GTCAAATCTT TCTATCACAA CCGTGGTTAT ATCCGCTTTG ATGTGACCTC TACGCAAGTC ACCATGACGC CGGATCGTAA AGGGCTCTAC ATCACGATTA ACGTCAATGA AGGTGAGCCG TATAAGGTTA AAGAGGTTAA CTTAACTGGT GACCTGATGG GACGTGAGAA GCTGATGAAA GCGATCCTTC CGATTAAAGC TGGGGATACC TATAATGGCG CCGATGTGAC CTTTGCCGAA GAGATGTATG GCAAGTACCT TGGCCGTTTT GGTTACGCTT ATCCAGAAGT GAAAACTTTC CCAGAAATTG ATGATGAGAC CAAAGAGGTC AGTCTGAACG TTAACATCAA GCCGGGTAAA CGAGTTTATG TTCGTAGCAT TAATTTTTCT GGTAACCAGG TAACTAAAGA TGAGGTGATG CGCCGTGAGC TTCGTCAGAT GGAAGGCGCT TGGTTAAACT CAGCTCAAGT TGAGCAATCA AAAGCTCGTC TGAATCGACT TGGTTATTTT GAAACTGTTG ATACTGAAAC GGTTCAAGTT CCGGGTACTG ACGATCTAGT TGATGTTGCC TTTAATGTGA AAGAGCAGCC ATCAGGCTCC TTTAATGCGG GTATTGGTTA CGGTACTGAA TCGGGCATGA GCCTGCAGTT TGGTGTGCAG CAGAGCAACT TCTTAGGTAC AGGTAATCAG GCGGGTATTA ACTTAAATAC CAACAAGTAT TCTAAGAACG TTAATCTCTC TTTCACCGAT CCCTACTTTA CTAAAGATGG GGTGAGCTTA GGTGGAAGCA TCTACTGGAA TGAGTTTGAT GCAGATGAAG CGAACTTAGA AGCTTATAAA AACAGCTCAT ATGGTATTGC GGTTAACTCA GGTTTCCCGA TTAACGAATA TAACCGTATC AATGGTGGTT TAGGCTACCG TCATAACGAA ATTTCTGAAA TTTCAGCTTA TGAGCAAGCA CTGCGTTTCT ATAATATCTA TCGTGATAGT GACGATCCTA ATGCATCTCT CTCTTTCGAT AACTTTGAAG CAAACTTGGG CTGGTACCGT AGTACGCTAA ACCGAGGGAC TTTTCCATCG GATGGTTCAT CACAGCGTTT AAGTACAAAA ATGACCGTTC CTGGTTCAGA TCTGCAGTAT TTTAAAGCCG ATTTAGATAC TAGCTTCTAT TTCCCAATCA CTCGAAATCA CAGCTTTGTG CTATTAACTA AGGCACGCTT GGGTTACGGT AATGGTTATG GTCAGTTTGA AGATAACGAT CAGATCTTAC CATTTTGGGA GAACTATTAC TCAGGTGGTA GTAGCTCACT GCGTGGATTT AAGTCTAACT CAGTGGGGCC ACGTTCATTT TATTTGACTC GCGGTTTAGA GCCTTGCTCA CCAGATCCAT CGGGTGATGG TTGTTACTTG CCAGGTGATC CTAACCAGAT CCAGGTGAGT TCAGGTCGCT CTATTGGTGG TAATGCGATT GCAACTGCTA GCATGGAGCT TATAGTACCG ACGCCTTTCT TAGATGAGGC ATATACAAAC TCAGTACGAA CCAGTTTCTT CCTTGATGCG GGTAACGTAT GGGACACCGA GTTTGATTAT GATTCATATA GATACCTTCC GGCTCACGAA TTTGATAAGC TAGAGGATTA CTCAGATCCG GCTCGGATCC GTGCCTCATG GGGTATGAGT GTACAATGGT TGTCACCGAT GGGACCTATG GTGTTTAGCC TGGCATGGCC ACTTAAAGAG TATGAGGATG ATCAAACTGA GATCTTCTCA TTCAATATTG GTAAAACTTT CTAA
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Protein sequence | MRLNKLFASM VLVGASLSGN GWADTFQPFE VTDIQVQGLQ RVALGAALLT IPVKVGDTVD ELKLRQAIKS LYASTNFEHI EVSRDGGVLV VTVKERPTIS AVTFEGNKDI KDEQLQESLD GSGVKTGEAL DRTMLSGIEK SLQDFYYGVG KYGAKVEAQV INLPRNRVEL KFNFTEGLAA EIKQINFVGN EVFSDAELTG MLELKDFVAW WDLFGERRYQ KQKLQADLET VKSFYHNRGY IRFDVTSTQV TMTPDRKGLY ITINVNEGEP YKVKEVNLTG DLMGREKLMK AILPIKAGDT YNGADVTFAE EMYGKYLGRF GYAYPEVKTF PEIDDETKEV SLNVNIKPGK RVYVRSINFS GNQVTKDEVM RRELRQMEGA WLNSAQVEQS KARLNRLGYF ETVDTETVQV PGTDDLVDVA FNVKEQPSGS FNAGIGYGTE SGMSLQFGVQ QSNFLGTGNQ AGINLNTNKY SKNVNLSFTD PYFTKDGVSL GGSIYWNEFD ADEANLEAYK NSSYGIAVNS GFPINEYNRI NGGLGYRHNE ISEISAYEQA LRFYNIYRDS DDPNASLSFD NFEANLGWYR STLNRGTFPS DGSSQRLSTK MTVPGSDLQY FKADLDTSFY FPITRNHSFV LLTKARLGYG NGYGQFEDND QILPFWENYY SGGSSSLRGF KSNSVGPRSF YLTRGLEPCS PDPSGDGCYL PGDPNQIQVS SGRSIGGNAI ATASMELIVP TPFLDEAYTN SVRTSFFLDA GNVWDTEFDY DSYRYLPAHE FDKLEDYSDP ARIRASWGMS VQWLSPMGPM VFSLAWPLKE YEDDQTEIFS FNIGKTF
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