| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3266 |
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| Symbol | dnaE |
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| ID | 6117585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4005922 |
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| End bp | 4009395 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641634810 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_001761631 |
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| Protein GI | 170727605 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.440143 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGATC CCAGTTTTGT CCATTTACGT GTCCACAGTG ATTTCTCTAT GTCAGATGGA
TTGGCAAAAG TTAAGCCAAT TATCGGTAAA GTATCAGAAC TTGGCATGCC AGCCGTTGCA
CTGACAGATC AAACTAACCT GTGTGGTTTG GTAAAGTTCT ATGAAGCGTG TCACGGGGCT
GGGATTAAAC CACTTATTGG TTCGGACTTT TGGGTCAAGG TCCCAGGTTT TGATAAGAAT
CTTTGCGCTG TTACTGTGTT AGCGATGAAT AATGAGGGTT ATAAGAATTT AACCTTGTTG
ATCAGTGATG CCTATCTTAG GGGACATATT GATGACAGAG CGGTTATCGA TCATGAGTGG
CTAGCAAAGT ATTCTGAGGG GATAATTCTT CTATCTGGTG GCCGCCAAGG AGATATAGGT
CAGGCTCTAT TAAAAGGCAA TTTGCCTCAG GTTGAATCAT TGGTCGAGTT TTATCAGACC
CACTTCCCCG ATAGATATTA TCTTGAGTTA CTGCGTACAG GACGTCCAGA TGAGGAGCGT
TACCTGCATA TGGCAGTTGA GCTTGCAGAG GTCAAAGGCC TGCCTGTCGT TGCCACTAAC
CAAGTTGTAT TCAATACCCC TGAACTGTTT GAAGCCCATG AGATCCGCGT AGCTATCTCT
GATGGTTTTA CCTTAGCCGA TCCCCGCCGC CCTAAAAAAT ACAGTGCGGA GCAGTATTTT
AAAAGCAGCG AGCAGATGTG TGAGCTGTTT GAAGACATTC CAGAAGCGAT TGAAAACACC
GTTCAGATAG CTAAACGCTG TAACGTGACA GTAAGATTAG GCGAGTATTT CCTGCCTAAC
TTTCCCACAG GTGAGCTTAC CATTGAGGAC TTCTTAGTTG CGGTTTCTGA AAAGGGACTT
GAAGAGCGTC TTGAGTTTCT TTTTCCTGAT CCTGAAGTAA GAGCTGAAAA ACGCCCTAAA
TATGATGAGC GTCTTGATGT CGAACTTAAA GTAATTAACC AGATGGGATT CCCTGGTTAC
TTCTTGATCG TAATGGAGTT TATTCAGTGG GGTAAGGATA ATGATATCCC TATCGGTCCC
GGTCGAGGCT CTGGTGCGGG CTCGTTAGTG GCTTATGCCC TTAAAATTAC CGATCTTGAT
CCACTGGAGT ATGAGCTTCT TTTCGAACGA TTCCTTAACC CTGAGCGTGT CTCTATGCCG
GATTTCGATA TCGATTTCTG TATGGATAGA CGAGACGAGG TGATCGATCA CGTTGCTGAG
CTTTATGGTC GCGACGCGGT GTCGCAAATT ATCACCTTCG GTACCATGGC TGCAAAAGCG
GTTATTCGAG ATGTAGGACG CGTGCTCGGT CACCCCTATG GTTTCGTTGA TCGGATCTCT
AAAATGGTGC CAGCAGAACC TGGCATGACC TTAGCCAAAG CGTTTGAGGT TGAGCCTGCA
CTGCAGGAGT CTTATGACGC TGATGAAGAG GTGAAAGACC TTATTGATAT GTGTCGCATC
CTTGAAGGTG TGACACGTAA CGCAGGTAAG CACGCGGGTG GTGTGGTTAT CTCGCCGACG
ACAATCACTG ACTTTGCGCC AATCTATTGT GATGCAGAGG GACAAAACCC GGTTACTCAG
TTTGATAAGA ACGACGTAGA AACCGCAGGC TTGGTTAAGT TTGACTTCTT AGGTCTGCGA
ACCCTGACTA TTGTCGACTG GGCCTTGCAG ATGGTCAATG CCAAGAAAGA TAAACTTGGG
GAGGAGCGAG TTCGAATCGA GTCGATTCCC CTTGACGACC CAGCAAGCTT TAGACTGTTA
CAACGATATG AAACTACGGC AGTATTTCAG CTGGAATCCC GAGGGATGAA AGATCTGATT
AAACGCCTAC AACCAGATTG CTTTGAAGAT ATGATCGCAC TGGTAGCGCT ATTTAGGCCA
GGTCCACTGC AATCGGGCAT GGTAGATAAC TTTATCGAGC GTAAGCATGG TCGTGAGGCG
GTTTCATATC CAGATTCTGA GTACCAACAC GAGTCTCTTC AGTGGGTGCT CGAGCCAACC
TACGGCATTA TTCTCTATCA AGAGCAGGTG ATGCAGATTG CACAGGTTCT TGCTGGCTAC
ACCTTGGGCG GCGCGGATAT GCTCCGTCGT GCTATGGGTA AGAAAAAACC CGAAGAGATG
GCGAAACAGC GCGGTACTTT CGAAGAGGGC TCTATCAATA ATGGTGTCGA TGGCCCATTG
TCGATGAAAA TTTTCGATCT GGTAGAGAAG TTTGCAGGTT ACGGTTTTAA CAAGTCACAC
TCGGCTGCAT ACGCTCTGGT GTCCTATCAA ACACTTTGGT TAAAGACCCA TTATCCTGCT
GAGTTTATGG CTGCGGTAAT GTCGGCAGAT ATGGATAACA CTGACAAGAT TGTTATTTTA
GTCGATGAGT GTGAGCGAAT GGAGATGCCG CTTCTTCCGC CGGATGTGAA TAAGGGTTTA
CTTAAGTTTA ACGTCGATGA TGAAGGCAAT ATCGTTTACG GTATCGGCGC GATTAAAGGA
GTGGGCGAGG GGCCGGTTGA TTCAATTCTT GCTGCTCGAA AAGATGGCCC CTTTAAAGAC
TTGTTCGACT TTTGTGCTCG TGTCGATCTG AAAAAACTCA ATAAGCGCAT TATGGAGAAG
CTCATCTGTG CTGGCGCATT AGATACCTTA GGTCCTCATC GTGCAGCGAT GATGGCCACT
TTGCCAGAAG CGATACGTGC TGCGGATCAA AATGCCAAAG CGGAAGCGAT AGGCCAACAC
GATATGTTTG GTCTGTTAAA TTCAGATCCA GAGGATATAA AACAGCAGTT CGTAGAGTGC
ACGCCTTGGC CTGATAAAGT TTGGCTGGAG GGGGAGAGAG AGACGTTAGG TTTATACCTG
ACGGGTCACC CGATCAATCA GTATCTCAAA GAGTTAAAGC ACTACACCTC ATGCCGTCTT
AAAGATATAC ATCCGACAGA GCGTGGTAAA ACCATGAAGG CGGCGGGTCT TGTTGTCGCG
ACCCGCGTTA TGATGACCAA GCGCGGCTCA AAGATGGGAC TGGTAACCTT AGACGATAAG
AGTGCGCGCC TTGAGGTGAT GTTATTTACC GAAGCGTTTG AAAAATTCAA TCATCTTTTG
GAGAAAGATA GGATCCTCAT TATCGAAGGC GAAGTCAGTT TCGATGATTT TGCTGGCGGC
AACCGCATGA CCGCTAGAAA CATTATCGAT ATGGGGGAAG CACGTAGCCA CTTTGCCAGT
GCCGTTGAGG TTGATATCGA GAGTCATGCT ATATCCACCG ATTGGCTCGA TCAGTTTCAG
GGGGCGATTG AACCTTGGAA AAACGGTGCG GTACCTATCA TGGTCAACTA TAGCCAACCT
CAGGCTAAAG CCCAGTTTAA GCTAGGGGAT AGCTGGCGAG TTAATCCAAC GGATGAGCTG
ATGTTAGCGT TGGAAACATT AACTGGTGCG GGTAAAGTCA GGATCTTATT TTAA
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| Protein sequence | MSDPSFVHLR VHSDFSMSDG LAKVKPIIGK VSELGMPAVA LTDQTNLCGL VKFYEACHGA
GIKPLIGSDF WVKVPGFDKN LCAVTVLAMN NEGYKNLTLL ISDAYLRGHI DDRAVIDHEW
LAKYSEGIIL LSGGRQGDIG QALLKGNLPQ VESLVEFYQT HFPDRYYLEL LRTGRPDEER
YLHMAVELAE VKGLPVVATN QVVFNTPELF EAHEIRVAIS DGFTLADPRR PKKYSAEQYF
KSSEQMCELF EDIPEAIENT VQIAKRCNVT VRLGEYFLPN FPTGELTIED FLVAVSEKGL
EERLEFLFPD PEVRAEKRPK YDERLDVELK VINQMGFPGY FLIVMEFIQW GKDNDIPIGP
GRGSGAGSLV AYALKITDLD PLEYELLFER FLNPERVSMP DFDIDFCMDR RDEVIDHVAE
LYGRDAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KMVPAEPGMT LAKAFEVEPA
LQESYDADEE VKDLIDMCRI LEGVTRNAGK HAGGVVISPT TITDFAPIYC DAEGQNPVTQ
FDKNDVETAG LVKFDFLGLR TLTIVDWALQ MVNAKKDKLG EERVRIESIP LDDPASFRLL
QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREA
VSYPDSEYQH ESLQWVLEPT YGIILYQEQV MQIAQVLAGY TLGGADMLRR AMGKKKPEEM
AKQRGTFEEG SINNGVDGPL SMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHYPA
EFMAAVMSAD MDNTDKIVIL VDECERMEMP LLPPDVNKGL LKFNVDDEGN IVYGIGAIKG
VGEGPVDSIL AARKDGPFKD LFDFCARVDL KKLNKRIMEK LICAGALDTL GPHRAAMMAT
LPEAIRAADQ NAKAEAIGQH DMFGLLNSDP EDIKQQFVEC TPWPDKVWLE GERETLGLYL
TGHPINQYLK ELKHYTSCRL KDIHPTERGK TMKAAGLVVA TRVMMTKRGS KMGLVTLDDK
SARLEVMLFT EAFEKFNHLL EKDRILIIEG EVSFDDFAGG NRMTARNIID MGEARSHFAS
AVEVDIESHA ISTDWLDQFQ GAIEPWKNGA VPIMVNYSQP QAKAQFKLGD SWRVNPTDEL
MLALETLTGA GKVRILF
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