Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3263 |
Symbol | |
ID | 6117582 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 4001484 |
End bp | 4003445 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641634807 |
Product | sodium/hydrogen exchanger |
Protein accession | YP_001761628 |
Protein GI | 170727602 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0475] Kef-type K+ transport systems, membrane components [COG0569] K+ transport systems, NAD-binding component |
TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.538739 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACATA GCTTTCTTAT CCAAGTTCTA ATGATGCTTG TGATTGCCAT CATCTCCATC GCCATATTAA GACGTGCAGG TTTGCCCGCG ATTTTGGCTT ATCTACTCAC TGGCGTCATC AGCGGACCTT CGGGATTCAA CTGGTTTAGC CAGCAGCAGA TGCACTCAGT TGCTGAGTTA GGTGTGGTTC TACTTATGTT CAGTTTGGGG CTTGAGTTTT CTCTGCCCAG ACTATGGGCC ATGAGACGAA CCGTATTTGG CTTAGGTAGT GCGCAAGTGG TGATAACCGC AGCTCTGGCA ACCTGTATTG CCCTGCTTAG TTCATTGACC ATTGTTGAAT CCGTTGTTGT GGGCTCAGCG ATTGCCCTGT CATCGACGGC AATTGTATTG AAGTTACTCA ATGAGCAGGG CTGGCTAAGG CGCAGGCATG GTGAGCTCTC TGTCAGTGTT CTGTTATTTC AAGACTTAGC CGTGGTGCCG CTGCTTATCT TACTCCCCTT GTTGGCCTCC GGTGAAGATG TGCTCTCTTT TAAGAGTGTT GCTTGGGCGA TGGCTGAAGG CGGCTTAATC TTTGCGGCCT TAATGGCATT TGGTAAATGG GGATTACCGA GAATGTTTGA TGAGGTAGCC CGCTCCCGTT CAAACGAACT CTTTATGCTC TCAACCTTAG TGGTGGCATT GTTAACTGGC GCTTTGACCC AATGGTTAGG CCTCTCAATG GCGCTTGGGG CCTTTTTGGC TGGTATGTTG TTGGGGGAGA GTCAGTATAA AGGTCAGCTT GAAGCGGATA TTCGCCCCTT TAGGGATCTG CTGATGGGCC TCTTTTTTAT CTCCATAGGT ATGCTTTTGG ACTTCTCTTT GGTGGTCGAT TACTGGGGAG AGATCTTAAT CCTGCTGTTT GCGGTTATTT TAGGTAAAGC TTGGGTGATT TTTGCTCTGC TACGTTTTGC CCGTGAATCC TTTAGAACAT CAATATCCAC GGCGTTGACT TTAGCTCAGG TGGGGGAGTT TAGTTTTGTT GTGTTGGCAC TGGCGGTTAA TTATCACCTT TTAGATATCG TGTTAAGCAC TAAGCTTGTG ATGGTAGCCG TTCTCTCAAT GGCGCTTGCT CCTTGGCTGG TACGCCACAG CGTCGATATT GCTCGAGTTA TGCAGGGGGT TAGGCCAAAA GAGATTGAGG CGCCCTTGAT TGTACCTAGT ATTGAGCATG ATGAAGACCA TGAAAAGGAT TTGGTGTTGA TATTAGGCTA TGGCCGTGTC GGTCAGACTA TTGCGCGCTT TATGAAGACA GAAGCGGTGC CCTTTTTGGT GCTTGATCTG GATCCTACCC GGGTTTCTGA GGCGAGAAAA GCGGGGGAGC CTGTTTACTT TGGTGATGTG TGTAAGCGCA GTATCTTAAA GCAAGCCAGA ATCAAAGAGG CGAAGCTTAT CGTCTTAACT TTCAGTGATA GCCGGATCCT TGAGGAGGTG CTACCTCTGT GTCGCTACCT TGCTCCCGAT GCAAAAATTT TAGTGAGAAC ACGTGATGAT AGCAACCTTG AGGAGCTTGA AGCTGCAGGG GCCAGTCAGG TAATTCCTGA GAGTTTAGAG GGAAGTTTGA TGTTGGTGTC TCAAGTACTC TATCAGTGTG GTGTACCTTT AACCCGTATT TTAAAAAGGC TTGAGTTTGA ACGTCGTAAT CACTATCAGT ACCTCCATGG TTTCTTCTCC GGTTCAGAAA CTGATATTAC CTTAGAGCAT CTTCACGCCG TGGCGCTTCC TAAGGGCGCG CATGCTGTTG GTCTCACACT TGGTGAGATC CCTTGGGGTA AGCTCAGGGT TGAGCTTCGA GCGGTAAGAC GTTGCGGCGC TGAGATAGAA AAGCCTGAAA TGGATTGGAA GATCCGTTCT GCCGATACGC TTATTTTACT TGGAAAGCCA CGTCGAATAG AGAAAGCGGA GCATTACCTC CTACAGGGAT AG
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Protein sequence | MEHSFLIQVL MMLVIAIISI AILRRAGLPA ILAYLLTGVI SGPSGFNWFS QQQMHSVAEL GVVLLMFSLG LEFSLPRLWA MRRTVFGLGS AQVVITAALA TCIALLSSLT IVESVVVGSA IALSSTAIVL KLLNEQGWLR RRHGELSVSV LLFQDLAVVP LLILLPLLAS GEDVLSFKSV AWAMAEGGLI FAALMAFGKW GLPRMFDEVA RSRSNELFML STLVVALLTG ALTQWLGLSM ALGAFLAGML LGESQYKGQL EADIRPFRDL LMGLFFISIG MLLDFSLVVD YWGEILILLF AVILGKAWVI FALLRFARES FRTSISTALT LAQVGEFSFV VLALAVNYHL LDIVLSTKLV MVAVLSMALA PWLVRHSVDI ARVMQGVRPK EIEAPLIVPS IEHDEDHEKD LVLILGYGRV GQTIARFMKT EAVPFLVLDL DPTRVSEARK AGEPVYFGDV CKRSILKQAR IKEAKLIVLT FSDSRILEEV LPLCRYLAPD AKILVRTRDD SNLEELEAAG ASQVIPESLE GSLMLVSQVL YQCGVPLTRI LKRLEFERRN HYQYLHGFFS GSETDITLEH LHAVALPKGA HAVGLTLGEI PWGKLRVELR AVRRCGAEIE KPEMDWKIRS ADTLILLGKP RRIEKAEHYL LQG
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