Gene Swoo_3263 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3263 
Symbol 
ID6117582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4001484 
End bp4003445 
Gene Length1962 bp 
Protein Length653 aa 
Translation table11 
GC content48% 
IMG OID641634807 
Productsodium/hydrogen exchanger 
Protein accessionYP_001761628 
Protein GI170727602 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0475] Kef-type K+ transport systems, membrane components
[COG0569] K+ transport systems, NAD-binding component 
TIGRFAM ID[TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.538739 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACATA GCTTTCTTAT CCAAGTTCTA ATGATGCTTG TGATTGCCAT CATCTCCATC 
GCCATATTAA GACGTGCAGG TTTGCCCGCG ATTTTGGCTT ATCTACTCAC TGGCGTCATC
AGCGGACCTT CGGGATTCAA CTGGTTTAGC CAGCAGCAGA TGCACTCAGT TGCTGAGTTA
GGTGTGGTTC TACTTATGTT CAGTTTGGGG CTTGAGTTTT CTCTGCCCAG ACTATGGGCC
ATGAGACGAA CCGTATTTGG CTTAGGTAGT GCGCAAGTGG TGATAACCGC AGCTCTGGCA
ACCTGTATTG CCCTGCTTAG TTCATTGACC ATTGTTGAAT CCGTTGTTGT GGGCTCAGCG
ATTGCCCTGT CATCGACGGC AATTGTATTG AAGTTACTCA ATGAGCAGGG CTGGCTAAGG
CGCAGGCATG GTGAGCTCTC TGTCAGTGTT CTGTTATTTC AAGACTTAGC CGTGGTGCCG
CTGCTTATCT TACTCCCCTT GTTGGCCTCC GGTGAAGATG TGCTCTCTTT TAAGAGTGTT
GCTTGGGCGA TGGCTGAAGG CGGCTTAATC TTTGCGGCCT TAATGGCATT TGGTAAATGG
GGATTACCGA GAATGTTTGA TGAGGTAGCC CGCTCCCGTT CAAACGAACT CTTTATGCTC
TCAACCTTAG TGGTGGCATT GTTAACTGGC GCTTTGACCC AATGGTTAGG CCTCTCAATG
GCGCTTGGGG CCTTTTTGGC TGGTATGTTG TTGGGGGAGA GTCAGTATAA AGGTCAGCTT
GAAGCGGATA TTCGCCCCTT TAGGGATCTG CTGATGGGCC TCTTTTTTAT CTCCATAGGT
ATGCTTTTGG ACTTCTCTTT GGTGGTCGAT TACTGGGGAG AGATCTTAAT CCTGCTGTTT
GCGGTTATTT TAGGTAAAGC TTGGGTGATT TTTGCTCTGC TACGTTTTGC CCGTGAATCC
TTTAGAACAT CAATATCCAC GGCGTTGACT TTAGCTCAGG TGGGGGAGTT TAGTTTTGTT
GTGTTGGCAC TGGCGGTTAA TTATCACCTT TTAGATATCG TGTTAAGCAC TAAGCTTGTG
ATGGTAGCCG TTCTCTCAAT GGCGCTTGCT CCTTGGCTGG TACGCCACAG CGTCGATATT
GCTCGAGTTA TGCAGGGGGT TAGGCCAAAA GAGATTGAGG CGCCCTTGAT TGTACCTAGT
ATTGAGCATG ATGAAGACCA TGAAAAGGAT TTGGTGTTGA TATTAGGCTA TGGCCGTGTC
GGTCAGACTA TTGCGCGCTT TATGAAGACA GAAGCGGTGC CCTTTTTGGT GCTTGATCTG
GATCCTACCC GGGTTTCTGA GGCGAGAAAA GCGGGGGAGC CTGTTTACTT TGGTGATGTG
TGTAAGCGCA GTATCTTAAA GCAAGCCAGA ATCAAAGAGG CGAAGCTTAT CGTCTTAACT
TTCAGTGATA GCCGGATCCT TGAGGAGGTG CTACCTCTGT GTCGCTACCT TGCTCCCGAT
GCAAAAATTT TAGTGAGAAC ACGTGATGAT AGCAACCTTG AGGAGCTTGA AGCTGCAGGG
GCCAGTCAGG TAATTCCTGA GAGTTTAGAG GGAAGTTTGA TGTTGGTGTC TCAAGTACTC
TATCAGTGTG GTGTACCTTT AACCCGTATT TTAAAAAGGC TTGAGTTTGA ACGTCGTAAT
CACTATCAGT ACCTCCATGG TTTCTTCTCC GGTTCAGAAA CTGATATTAC CTTAGAGCAT
CTTCACGCCG TGGCGCTTCC TAAGGGCGCG CATGCTGTTG GTCTCACACT TGGTGAGATC
CCTTGGGGTA AGCTCAGGGT TGAGCTTCGA GCGGTAAGAC GTTGCGGCGC TGAGATAGAA
AAGCCTGAAA TGGATTGGAA GATCCGTTCT GCCGATACGC TTATTTTACT TGGAAAGCCA
CGTCGAATAG AGAAAGCGGA GCATTACCTC CTACAGGGAT AG
 
Protein sequence
MEHSFLIQVL MMLVIAIISI AILRRAGLPA ILAYLLTGVI SGPSGFNWFS QQQMHSVAEL 
GVVLLMFSLG LEFSLPRLWA MRRTVFGLGS AQVVITAALA TCIALLSSLT IVESVVVGSA
IALSSTAIVL KLLNEQGWLR RRHGELSVSV LLFQDLAVVP LLILLPLLAS GEDVLSFKSV
AWAMAEGGLI FAALMAFGKW GLPRMFDEVA RSRSNELFML STLVVALLTG ALTQWLGLSM
ALGAFLAGML LGESQYKGQL EADIRPFRDL LMGLFFISIG MLLDFSLVVD YWGEILILLF
AVILGKAWVI FALLRFARES FRTSISTALT LAQVGEFSFV VLALAVNYHL LDIVLSTKLV
MVAVLSMALA PWLVRHSVDI ARVMQGVRPK EIEAPLIVPS IEHDEDHEKD LVLILGYGRV
GQTIARFMKT EAVPFLVLDL DPTRVSEARK AGEPVYFGDV CKRSILKQAR IKEAKLIVLT
FSDSRILEEV LPLCRYLAPD AKILVRTRDD SNLEELEAAG ASQVIPESLE GSLMLVSQVL
YQCGVPLTRI LKRLEFERRN HYQYLHGFFS GSETDITLEH LHAVALPKGA HAVGLTLGEI
PWGKLRVELR AVRRCGAEIE KPEMDWKIRS ADTLILLGKP RRIEKAEHYL LQG