| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3258 |
|---|
| Symbol | |
|---|
| ID | 6117577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 3994041 |
|---|
| End bp | 3995108 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641634802 |
|---|
| Product | mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_001761623 |
|---|
| Protein GI | 170727597 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.915646 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGACT CAACTAAACG GCTCCACTTC TACGGAGAAG ATTTTGAGCT AATCGCAATT
CAGCAGTCGA TTCCTCTTAA GCAGGTTTTT AGAATCGCTC GCGGTGCAAA AAACGCCGCA
CAGGTGATCG TGGTAATAAT TAAGTATCAA GGAGTTATCG GATGGGGTGA ATCCGTCCCC
TATGCTCGAT ATGGAGAAAC CATTGAAGGC ATCATATCAA GTATCAAAAC CGTCTGTACT
CACGCTAAGC GGTTTACCGA CTTTGCCAAC GCCATCTCAG CCCATAGTCA AGGTGCCGCT
CAAAATGCAC TGGATTGCGC CTACTTAGAT CTTCAAGCAA AATTAACCGG CATAGCAACA
CAGGCTCGCT TTAATTTACC AAAAACACGC GCTGTGATCA CAGCGCAGAC CTTGAGTATC
GACACTCCAG AGGCAATGGC AGAAGCGGCT AAACCCTTAG CAAAAGCGCC ATTAATTAAG
GTTAAACTCG ACAATATCGA CATCGTTGAA AAGATGACAG CTATCTATGC TATGGCTCCC
CATAGTCAGT TTATTGTGGA TGCGAATGAA GCATGGTCTA TTGAAGATTT AAAATTATGT
GCAGATAAAC TTGCTGCGCT AAACGTGGTA CTGATTGAGC AACCCTTACC CGCAGAAAAA
GATGAAGCAC TTGCAAGTTT AACTATCAAT ATTGCGTTAT GCGCCGATGA GTCTTGCCAC
ACCGTCAAGG ATCTCTCTGC ACTTTCAGGC AAGTATGATG TCGTCAATAT CAAACTGGAT
AAAACTGGCG GATTAAACCA AGCCGTTGCT CTTGCGGCGC AAGCTAAAGA GATGGGCTTC
GACATCATGC TAGGCTGTAT GGTGGGCAGT TCACTGGCCA TGGCTCCCGC TTTTTTACTC
ACTCCTTTTG CAAAATATAT CGACCTTGAT GGCCCTTTAT TAGTCAAAGA GGATAGGCTG
GTGAGTTTCG ATATTGATAA TGGCCTCATG CAACCCTTCA ATGAACAACT TTGGGGTGGA
GTGGACTTAG AGTCCAACAT CGAAGCGGAT CAACTAATCA AACTTTAG
|
|---|
| Protein sequence | MIDSTKRLHF YGEDFELIAI QQSIPLKQVF RIARGAKNAA QVIVVIIKYQ GVIGWGESVP
YARYGETIEG IISSIKTVCT HAKRFTDFAN AISAHSQGAA QNALDCAYLD LQAKLTGIAT
QARFNLPKTR AVITAQTLSI DTPEAMAEAA KPLAKAPLIK VKLDNIDIVE KMTAIYAMAP
HSQFIVDANE AWSIEDLKLC ADKLAALNVV LIEQPLPAEK DEALASLTIN IALCADESCH
TVKDLSALSG KYDVVNIKLD KTGGLNQAVA LAAQAKEMGF DIMLGCMVGS SLAMAPAFLL
TPFAKYIDLD GPLLVKEDRL VSFDIDNGLM QPFNEQLWGG VDLESNIEAD QLIKL
|
|---|
| |