Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3254 |
Symbol | |
ID | 6117573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3987126 |
End bp | 3989978 |
Gene Length | 2853 bp |
Protein Length | 950 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641634798 |
Product | TonB-dependent receptor |
Protein accession | YP_001761619 |
Protein GI | 170727593 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.647514 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACAATA ATAAAAAGAC CTATGGTGTT GGGCTGAAAT TAAGCTATTT AAGTGTTTGC TTATGCAGTG CGTTAGCAAC ACATGCGTTA GCTGCAGAGG AGGAAGACAA GCAAGCAGCG GATGAGTCAA TTGAACGTGT AAGCGTGGTT GGCTCTAATA TTAAGCGCGC TGTCGACAGC GGCTCACTCC CTGTCACTAT GCTGACAGAG GAGGACATTG AAAACACGAT GGCGATGTCA GGCGATGACC TTTTACGTCA AATTCCGCAG ATGGGTGAAG TTAATTTTGG TGCGTCAACC GGTAATGGTG GCGTGAACGA TGCCCGTGGA GATGTAGCGT CAATTAACCT CAGAGGATTG GGTACGGGGA ATACCTTAAC CTTACTCAAT GGTCGTCGTG TTGTGACCCA TCCCGGTACT CAGACCGAAA ATTTTGTACC AGTTACAACG GTTAACTCGA ATGCGCTTCC TATTTCGGGT CTACGTTCAT TAGAGGTGCT CCGCGATGGC GCTGCCGCGA TTTATGGCTC TGATGCCGTT GCTGGTGTGG TGAACTACAA GTTAAAAGAT GATTATGAAG GACATAAAGT CTCTTTCTCC TATGGTGGTT CTGAAGGCAC CTCTTTGCGG GAGGGAACGA TGAGCTATTT AGGTGGCATA TCACTCAACG AAGGCAAGAC TCACCTTACT GGTTCATTAA GCTACTTTGA CAGAGAAGGT ATGATGGCAT CAGAGCGAGA CTATGCTAAA AGCCATGACC TACGTGAGTA CCCTACACTG CCTGAAGGCT TTATTGGTGA TACCCAGCTT GATAACCGTA CCACGACAAC CCCCTGGGGA GAGTTTAGAA GTGGGTCGTT AAAAACTTTT CATATTCAGC CAGACAGCAT GGATGGATGT GTTCAAGATC TCGGTAATGG GATCTGCGCT GATAAAGGTA GTTTGTCGAG AGATCTTCGT TTCGACCGCG GTACAACACG CTCTTTAGTA TCAGATGTCG ATAGACTCAA TTTTTATGGT TACGCTACCC ATGATCTGAG TGATTCACTC GAGTTTTTCT CAGAAATTAC CTATTACAAG GCCAACTCAG AGCGAAGGCG TGAACAGGCT GGTAACTTAA CGGCGCAGAG ATTTACTATC GATGAGAATG CCTACTACAA CCCGTTTGGA GAGAGTGTGG ATGTTAGGCG TTACCGTCCG ATAGATGCGG GCCCAAGAAT CATCAATGTC GAAAACACCA GTTACCGTAT TTTGGGGGGC TTTAAAGGAA ACTTCGGCGA CTGGGACTGG GACAGCGCGA TCTTCTATAC AGCTGCTGAA ACTAACGATG TTGCTAACCG AGTGCAGGCG AGTAAATTTC AAGCCGCAGT CAACAGTACC AACCCAGATC TGGCGTACAA TATCTTTAAT GGCGGAGATA TTAATAATCC CAATGCAGGG GATGGAACGC TAAATTCTCA AGCGGTGATC GATCAGTTTA TGGTCGATGT ACACAGAGAT GGTAAAACGA GCTTAGCGTC AATAGACTTT AAAGTGAGTA ACGGACAACT TTGGAGCCTA CCTTCAGGTG ATATTGGTCT TGCGATGGGG GTTGAATATC GCAGAGAGAC CTTTGAGGAT ATCCGCGATC CTCTACTAAA TGGCAGTAAC CCTTTTGTTG ATGCAGTCAC AGGTGAGGAG CTTTCTGGTA GTGATGTGTT GGGGTCAAGT CATACGCCAA ATTCAGATGC AGCAAGAAAT GTCGCTTCAG TTTATGCTGA ACTACTTATC CCGCTGTTAG ATTCCTACTC GCAATACCTT GAGCTGCAGA TTGCTGGCCG CTATGAGAAC TTCTCCGATG TGGGATCGGC GGCTAAACCT AAAGTTGCGC TCTACTGGGA ACCTATCGAT TGGTTAAGTA TTCGTGCTTC TTATGCTGGT GGCTTCAGGG CGCCAGGTTT GCCGCAAGTG AGCGCAGAAG GTGTGCCAAG AAGTAATGGA CTCTATGATC CTGTATTGGA CGAGACTTAT GGCATTATCG ATATTCGCAG TGGCTCTACT GATCTAAAGC CTGAAGAGTC GGTGAATAGC TCAGTTGGTT TTGTGTTCAA CCCAACCAGT AATTTTACCT TTACGGCTGA CTATTGGCAG ATAGAGCAGG AGAACATTGT TGGTATCTTA CCCGGCTCAT CTCATCTGCT TTATGACTCG CTTCTTCGTA GTCAAGGTTC ATCTAATCCT GCAGTGCTCC GTGATGACAG CACCATGGAG GTGATTCAGA TCAATAACGA TTATTTGAAT CTGAATATTC GTAATATTGA AGGCGTCGAC TTCAGTTTCC TTTATTCGCT TGAAACTGAC ATTGGTGAAT GGGATTTCTC TGCTAACGTG GCTCATCTGA TTAAGTTCTA TCAAGATGCA GATCCTATCT CAGCCGAGTT AATAGCGGCG CAAGAGGCGG GGAACCCTGC CGTTCCAGCT GATAGAACGG TTGCGGGGGC CGGCGATCTC ATTAAAGAAA ATGGCCGTCC TGAATGGCGT GGTAGAGCTG AGGTAAACTG GCGTTTAGAC CAGATCGGTG CTGGAGTTAG TTACAACTAC ATCAGTGATG TGATTGATAC GAGTGCGACT TACACCAATG ACAATGAGGA GGTAATTAAG CTGCCCGTAG ACAATTTTGA AACCATCAAT GTTTATGCTG ATTACCGTTT TAAAGGGGCT CACTTCCTTG ATAATAGTAA GCTGCGTTTA GGCGTCAGAA ACATCACTGA CGAACAGCCA CCTTTGGCTG ATGAGTTAGC CCACGGTTAC TTTGGCAGTT TACATTCAAA CCGTGGTCGA TACTTTTATA TGAACTTTAG TAAGTCATTC TAA
|
Protein sequence | MNNNKKTYGV GLKLSYLSVC LCSALATHAL AAEEEDKQAA DESIERVSVV GSNIKRAVDS GSLPVTMLTE EDIENTMAMS GDDLLRQIPQ MGEVNFGAST GNGGVNDARG DVASINLRGL GTGNTLTLLN GRRVVTHPGT QTENFVPVTT VNSNALPISG LRSLEVLRDG AAAIYGSDAV AGVVNYKLKD DYEGHKVSFS YGGSEGTSLR EGTMSYLGGI SLNEGKTHLT GSLSYFDREG MMASERDYAK SHDLREYPTL PEGFIGDTQL DNRTTTTPWG EFRSGSLKTF HIQPDSMDGC VQDLGNGICA DKGSLSRDLR FDRGTTRSLV SDVDRLNFYG YATHDLSDSL EFFSEITYYK ANSERRREQA GNLTAQRFTI DENAYYNPFG ESVDVRRYRP IDAGPRIINV ENTSYRILGG FKGNFGDWDW DSAIFYTAAE TNDVANRVQA SKFQAAVNST NPDLAYNIFN GGDINNPNAG DGTLNSQAVI DQFMVDVHRD GKTSLASIDF KVSNGQLWSL PSGDIGLAMG VEYRRETFED IRDPLLNGSN PFVDAVTGEE LSGSDVLGSS HTPNSDAARN VASVYAELLI PLLDSYSQYL ELQIAGRYEN FSDVGSAAKP KVALYWEPID WLSIRASYAG GFRAPGLPQV SAEGVPRSNG LYDPVLDETY GIIDIRSGST DLKPEESVNS SVGFVFNPTS NFTFTADYWQ IEQENIVGIL PGSSHLLYDS LLRSQGSSNP AVLRDDSTME VIQINNDYLN LNIRNIEGVD FSFLYSLETD IGEWDFSANV AHLIKFYQDA DPISAELIAA QEAGNPAVPA DRTVAGAGDL IKENGRPEWR GRAEVNWRLD QIGAGVSYNY ISDVIDTSAT YTNDNEEVIK LPVDNFETIN VYADYRFKGA HFLDNSKLRL GVRNITDEQP PLADELAHGY FGSLHSNRGR YFYMNFSKSF
|
| |