| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3239 |
|---|
| Symbol | |
|---|
| ID | 6117558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 3969347 |
|---|
| End bp | 3970654 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641634783 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001761604 |
|---|
| Protein GI | 170727578 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1228] Imidazolonepropionase and related amidohydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.534438 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGC TAACTGTTCT TAACCAAGTT GTCTCATCTA ACACTTTGAC TCTGTCAGTC
CTGGTTTGCT CAGCTCTCTC GAGTACCGTT TTTGCACACG ATATCGTGCC CGCCACGGCA
CAAAGTAACA GTATTATATT TAAAAACGCC ACTGTACATA CGGTCATTGA TGGCGTTAAG
CACAATACTA ATCTATTTAT TCAAGATGGG TTCATTAAAG CAATAGGCCC CGAAATCAGC
GCACCAGAAG CACTGATATT CGACGCCAGC AACAAACATA TCTATCCCGG CCTTATCGCA
CTAGACACGA GCATGGGCTT AGTTGAAGTG GAGATGATGC GTCCCAGTAA CGACAGTTAC
GACATAGGCT TAAGCAACCC TCAACTGGAG GCTATCACGG CCTTTAATCC AGATTCTGAG
ATAATTCCAA CCGTTAGAGT CAACGGCATT ACCCATGCTC AGGTAGTTCC TCAAGGAGAA
CGACTAGCAG GACAATCTGC ACTGGTGTCC ATGGACAGCT GGACAATAGA AGATGCTCTC
GTGCCATCGA CAATGGGATT TCATCTCTAC TGGCCTAAAC AGGGAGCGCT TCCTCAAGAT
GAAAAGAAGC GTGAAAAACA ACTTAAACAG CACCGCAAAG ATCTTAAACA ACTGGCTACC
ATCTTTGAGG AGGGCTATCG TTACTCCCTT GCCAGCAAGG CTAAAAAGCT GTCAAAACAA
GATATTCGCT GGCAGTCGAT GCTACCACTA TACCAAGGCG ATGCTCAGCT ATTTGTCCAT
GCCAACAGGC AAAAGCAGAT TGAGGAAGCG GTCTCTTTAG CCAAACAGTA TGGTTTTAAG
TTGGTGATCG TCGGTGGGTA TGATGCATGG CGCCTCTGTG AGTTACTCAA TGAGATAGAA
GCTAAGGTTA TCTATACAAA AACCTTAAGT CTTCCAATGA GAAAAGATGA GCCACTAGAG
ATGAGCTTTA AGATCCCAGC CCTGCTCAAA CAAGCTAATA TCCCCTTTGC TCTGGGCTTT
ACTTCAGACT GGAACAGCCG AAATCTCCCC CTTGCAGCAG GACAAACCGT TGCTTATGGT
TTAAGTAAAG AGGAGGCTCT ACAAAGCATC ACACTCGATG CAGCCAAGAT ACTCGGCGCC
GAGTCTATGG GAGCTTTGGC ACCGGGCTAC GCTGCAAACT TAGTGATTTC GGGCGGTGAT
ATATTGGACC CTATGATGAC CAAGATTGAA AAGGTCTATA TAGACGGCAG AGAGGTGGAT
CTAAATAATC GGCAACAACA GCTTTATCAA AAGTACCTAA AGCGATAG
|
|---|
| Protein sequence | MKKLTVLNQV VSSNTLTLSV LVCSALSSTV FAHDIVPATA QSNSIIFKNA TVHTVIDGVK
HNTNLFIQDG FIKAIGPEIS APEALIFDAS NKHIYPGLIA LDTSMGLVEV EMMRPSNDSY
DIGLSNPQLE AITAFNPDSE IIPTVRVNGI THAQVVPQGE RLAGQSALVS MDSWTIEDAL
VPSTMGFHLY WPKQGALPQD EKKREKQLKQ HRKDLKQLAT IFEEGYRYSL ASKAKKLSKQ
DIRWQSMLPL YQGDAQLFVH ANRQKQIEEA VSLAKQYGFK LVIVGGYDAW RLCELLNEIE
AKVIYTKTLS LPMRKDEPLE MSFKIPALLK QANIPFALGF TSDWNSRNLP LAAGQTVAYG
LSKEEALQSI TLDAAKILGA ESMGALAPGY AANLVISGGD ILDPMMTKIE KVYIDGREVD
LNNRQQQLYQ KYLKR
|
|---|
| |