Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3218 |
Symbol | |
ID | 6117537 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3943061 |
End bp | 3945334 |
Gene Length | 2274 bp |
Protein Length | 757 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641634762 |
Product | peptidase U32 |
Protein accession | YP_001761583 |
Protein GI | 170727557 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0826] Collagenase and related proteases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000467027 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGTAGAA AAATTGAGTT GTTAGCGCCT GGCGGCGATG TTGAAGCAAT TAAGGCCGCC ATTGTTGCCG GTGCAAACGC AGTCTATTGT GGATTAGATA CCTTTAATGC CCGTAATCGC GCTGCAAACC TCTCATTTGA CGATCTCTGT GGCATCCTCA GGCTTGCTCA TCAGTTTGAC TGTGAAGTGT TTCTAACAAT TAATGTGGTG ATATTAGAGC AGGAACTTCC GGCACTCTTT AAGCTACTCA ATCAATTAGT CAATACCAGC TTAGATGGCA TAATCGTTCA AGATTTAGGC CTATTTAACC TAGTAAAGAA ATATTTCCCA ACACTGGATA TCCACGCATC GACTCAGCTA ACCACCCATA ATGAAGGTCA GATCCTATTT CTAAATAAGA TAGGAGCCTC TCGCGTTAAC CTGTCACGGG AGTTAAATTT ACCCGAGATA GCCTCATTAA CAGCCCTTGC CCACCAGCAC GATATGCTCA CCGAAGTCTT TGTTCATGGT TCACTGTGTA TCGCTTTCTC CGGCCAGTGT TACTCCAGTT CAGTCAGTGT TGGAAACTCA GGGAACCGTG GCCGCTGCAG TCAGGCCTGT CGCGATGAAT ATGAAGAGAC AGCCGCAGGT AATAAATACC CACTGAATTT AAAAGACAAT TCAGCCTATT TCGACCTCCC AGAGTTGGTT GAGGCTCAGG TTGACTCGCT TAAGATTGAG GGACGAATTA AAGGCGCTCA TTATGTCTAC ACCGTTGTTG ATAGCTGGCG TAAACAGATA AATCAGTTTG TCGAAACAGG TAAGTTGCTC GATGATGACT CAAACCTCTA CAAGGTATTC AATCGCGACT TTACCAACTC CTTTCTCAAA GGCAATCTGA CCAAAGGGAT GTTTATCGAT AACCCTCGCG ATAACAGTGT TAATCACGCC ATCGAGCAGA AAAATGCGAT CTCAGTGGTA CAGATCCAAG AGGTGAGACA GAACCTCAGA GCCGATAAAA ATGAGCTAGG CGCCTCCCTT GAGCAGAAGA TCCAACATCT CAACATCGAT AAGATGCCAT TAACCCTGAC CTTTTCAGGA ACAGAAGGCT CGCCGTTAAC CATCAAGGCA GGTGTGACAG CGAAATCAAA TCGACTGACA GAGAACACAG AGTCTAATGA ATTTACCCTA CACTCCGACA CTAAACTGCG AAAGTCAGAC AAGCCACTTT GTGCCGATGT GCTAGAAAAA CGCTTTAGAA GCTTCAACGA TTCAAACTAT ATTATCCAAG AATATGACTT TAATCAGCTA GCAGAGAGTT TAAGTATTCC CTTTAAAGAG CTAACCGCCC TTAAAAACAG GCTGGCATTT TTACTCAATG ACTCAGTTGA AGTGATTGCT CCTGTCGAGC CACCTAAACT TATTCAAGCT GAAAAAGTAG AAGATTCACC TAAGCTATCT CTGCTTATCA GTGATGAGAA AGATGCTCAC CTGTGTGATG TTACTAAGGC TGATATCTAC TTTAAACTGC CTGAGAGCTT TAAAAAGGGC TGTAATAAAT ATATCGAGCT GCTACAACGT AACCCAAGGT TCATCCCTTG GTTTCCAGCT GTACTTATCG GCAAAGATTA CATTGAAGCG GTGCGGATCC TTGAGCAGGT CAAACCTAAA CGTATCGTCA GCAATAACAC AGGTGTCGCC TACAAAGCCT TTGAGATGGG CATTGACTGG ATAGCAGGGC CTTTTCTCAA CACCACTAAC TCCTATGCTC TACTAACGAT GCAGGAGGAG CTAAACTGCT CCGGCGCGTT TATCTCCAAC GAGATAAACC GGATGCAGAT CCGCAATATC AAGCGTCCAG CAGGATTTAA ACTGCTCTAC AGCATCTATC ACCCTATATT GATGATGACA AGCAGACAGT GCTTCTTCCA GCAAACCGTT GGTTGTAATA AGCCAAGCAT TGAGGATGGC TGTATGCTTA AATGTGAAAA AGCCACCACG ATTACAAACG TCAAAGGGAT CTCCTTTGCC GTTGATAAAC AAAAAGGCGG TTACCCAAGC ATCTATAATG ATGAGCAGTT CCTCAACCTT GATGCCATTA AGGATTTCTC AGATCTCTTT GATGAGTTCT TTATCGATCT GACCGATATC GGTGCTGGCT CTAAAGCTAA GCTCGATAAA ATCCAGTTGA TTGAACATTT TGAAAACCTG CTTAAGGGTG ACGAAGATGC GGTTTCACTA CTAAACACTA TGGTGACACT CTCAACTAAC GCCCAATACC AGCAAGGATT GTGA
|
Protein sequence | MSRKIELLAP GGDVEAIKAA IVAGANAVYC GLDTFNARNR AANLSFDDLC GILRLAHQFD CEVFLTINVV ILEQELPALF KLLNQLVNTS LDGIIVQDLG LFNLVKKYFP TLDIHASTQL TTHNEGQILF LNKIGASRVN LSRELNLPEI ASLTALAHQH DMLTEVFVHG SLCIAFSGQC YSSSVSVGNS GNRGRCSQAC RDEYEETAAG NKYPLNLKDN SAYFDLPELV EAQVDSLKIE GRIKGAHYVY TVVDSWRKQI NQFVETGKLL DDDSNLYKVF NRDFTNSFLK GNLTKGMFID NPRDNSVNHA IEQKNAISVV QIQEVRQNLR ADKNELGASL EQKIQHLNID KMPLTLTFSG TEGSPLTIKA GVTAKSNRLT ENTESNEFTL HSDTKLRKSD KPLCADVLEK RFRSFNDSNY IIQEYDFNQL AESLSIPFKE LTALKNRLAF LLNDSVEVIA PVEPPKLIQA EKVEDSPKLS LLISDEKDAH LCDVTKADIY FKLPESFKKG CNKYIELLQR NPRFIPWFPA VLIGKDYIEA VRILEQVKPK RIVSNNTGVA YKAFEMGIDW IAGPFLNTTN SYALLTMQEE LNCSGAFISN EINRMQIRNI KRPAGFKLLY SIYHPILMMT SRQCFFQQTV GCNKPSIEDG CMLKCEKATT ITNVKGISFA VDKQKGGYPS IYNDEQFLNL DAIKDFSDLF DEFFIDLTDI GAGSKAKLDK IQLIEHFENL LKGDEDAVSL LNTMVTLSTN AQYQQGL
|
| |