Gene Swoo_3197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3197 
Symbol 
ID6117516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand- 
Start bp3924548 
End bp3925465 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content48% 
IMG OID641634741 
Product3-hydroxyisobutyrate dehydrogenase 
Protein accessionYP_001761562 
Protein GI170727536 
COG category[I] Lipid transport and metabolism 
COG ID[COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 
TIGRFAM ID[TIGR01692] 3-hydroxyisobutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.800362 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones8 
Fosmid unclonability p-value0.0128896 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTAGTG TCGCATTTAT TGGGTTAGGG CATATGGGAG CCCCCATGGC TGCCAATTTG 
GTTAAAGCTG GATTAACGGT ACGTGTATTC GACCTTGTCC CTCAAGCGAT GAAATCGCTA 
ACGGACTTAG GAGCTATCTC ATCAAGCAGT GCTTGCGGTG CGGCAGCGGG AGCTGATGTG 
GTGATCACTA TGTTACCAGC GGGCAAGCAT GTTCGCTCGC TATACCTTGG TGACGATACC 
AATAAAGGTT TGATTGATGT GGTTGCACAG GGCAGCTTAC TGATAGACTG CTCAACCATA 
GATGCGATGA GTGCACAAAC TGTCGCTAAG TCGGCAGCTG AGAAGGGGCT AGATTTTGTC 
GATGCGCCAG TATCTGGTGG CACGGCGGGA GCTGCTGCGG GTACGTTGAC CTTTATCTGT 
GGCGGTACTG ATAAAGCGTT TGACCAGGCG AAAGCTGTGC TTAGCAACAT GGGCGCCAAT 
ATTTTACATG CTGGTGGCGC TGGGGCAGGC CAAATTGCTA AAATATGCAA TAATATGCTG 
CTTTCAGTCT TGATGGTTGG AACAAGCGAG TCACTGCAGA TGGGTATCGA TCATGGACTT 
GACCCTAAGG TCTTGTCTGA GATCATGAAG GTCAGCAGCG GGGGCAATTG GACATTAGAT 
AAATATAATC CCTGTCCAGA TGTGATGCCA ACTGTGCCCT CATCTAATGG TTATCAAGGC 
GGCTTTATGG TGGATTTGAT GGTGAAGGAT TTAGGTCTTT CCCAAGAGGC TGCACTGCAG 
TCAAACTCCA GTACACCTAT GGGAGCCTTA GCACGCAGTT TATATGTGAA CCATGCCAGA 
CAAGGTAATG GTACACGAGA TTTTTCCAGT ATTTTTGAGC AGTTTACTAA TTCTCAACAG 
ATTAAAGATA AAGGGTAA
 
Protein sequence
MTSVAFIGLG HMGAPMAANL VKAGLTVRVF DLVPQAMKSL TDLGAISSSS ACGAAAGADV 
VITMLPAGKH VRSLYLGDDT NKGLIDVVAQ GSLLIDCSTI DAMSAQTVAK SAAEKGLDFV 
DAPVSGGTAG AAAGTLTFIC GGTDKAFDQA KAVLSNMGAN ILHAGGAGAG QIAKICNNML 
LSVLMVGTSE SLQMGIDHGL DPKVLSEIMK VSSGGNWTLD KYNPCPDVMP TVPSSNGYQG 
GFMVDLMVKD LGLSQEAALQ SNSSTPMGAL ARSLYVNHAR QGNGTRDFSS IFEQFTNSQQ 
IKDKG