| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3185 |
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| Symbol | |
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| ID | 6117504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3909552 |
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| End bp | 3911000 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641634730 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001761551 |
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| Protein GI | 170727525 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATAGGA TGCTTAAACG ACAACTTAAA AAAGCCTATC CAAAGGGAGC ACCTGATAAC
ATTGAGTTCG AGCAATTTGT AAAACTCATC GATCAAGCCT ACTTCTCCAT GAGTGAGGAG
CTTAGCATCA CAGAGCGCTC CTTAGATTTA AGCTGTGAAG AGTTAAAACA GCGTAACGAC
ACCTTAAGTG GCATACTTGA TGCTCTACCA GACATGAGTA TGTGGTTAGA TCAAGAGGGG
GTTATCCGCG ATATACGCGT AGGCGAATTT AATCCGCCTC TGGTAAGTAA AGAGGATGAG
CATTCCTCAA TCTCCAGCCT CCACTTTTTC AAAAACTCAA TCCCTCTACA GCACTTTCTC
ATCGACTATA AACAGATCGG TAGCAAGAGC GGAGAACTCG AGCTTAGCTG TGACAGTTTT
ACCTATCATG TAGAAGCAAA ACTCACCTCT GTCAGTAAAC AACGATGGCT TTTAGTTATT
AGAGATATCT CGTTAAGACG TAAACTAATT GAGATGCAAA CTGAAAGAAT GGACCAGATT
AAGCGGACCC AAAAGCAGCT TCAAGGTCTT ATAAATGCTG CACCAACGGG GATTTTAATC
ACAGATGAAA GTAAAAAGTT AGTCATGGTG AATGAATTTA TCTGCCAAAA GCTCTCCCTC
ACTACTGATG AATTATTAGG AAGAAACCCA TTAACTTTTA TCGCTAAAAA ATACCGATTG
GAATACCTCA GTGAGATACA AAAACATATC AGCTACGACG ACACAATATT AGACTCACGC
ATGGATCTCA CCATGACCCT GCCCAGTAAT GAGACAATAA AGGTTGAAAT GGCTTTTAGT
ACTCTGATTT TTGAAAAGAA AAAACTGGTG ATTACGGCCA TTACCGATAT TACAGAACGC
AAGCGTCTAG AGACTCAACT TAGAATTCTC GCATCAACAG ATCCCTTAAC TGGCGCATAC
AACCGACGCT GCTTCAATGA GCTGTCTCAA AAATCCATGT CATCTACCGA GCGTCAAGAG
CAAGAGTTCA CAATACTCTT AATTGACTTA GATTTTTTTA AAAGTATCAA TGATAAATTT
GGTCACGCTG CTGGTGACGA TGTATTAATC GAGACAGTAA AAGCCATCAA CACCTGCATA
CGTGAATCAG ATATCTTGGG ACGTTATGGC GGTGAAGAGT TTGTGGTTGC ACTACCAAAT
TCAGATAATA AAAAAGCCAG AGAGGTCGCC AACAGAATAC GCCTATGCAT TGAAAATATG
GTGGTCAAAA CCCAAGGACA TGACATCAAA CTCACTGCAA GCATTGGCTT AGCGACATCA
AGTGGAGGCC ACCAGCTTGA AAAGCAGATC AACCAAGCCG ATACCTATCT CTATTACGCC
AAAGATAATG GCCGTAACCA AGTTGTCGAT CATAAAATTT ACCATGCTAA CAGTAAGCTC
TGCCGTTAA
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| Protein sequence | MHRMLKRQLK KAYPKGAPDN IEFEQFVKLI DQAYFSMSEE LSITERSLDL SCEELKQRND
TLSGILDALP DMSMWLDQEG VIRDIRVGEF NPPLVSKEDE HSSISSLHFF KNSIPLQHFL
IDYKQIGSKS GELELSCDSF TYHVEAKLTS VSKQRWLLVI RDISLRRKLI EMQTERMDQI
KRTQKQLQGL INAAPTGILI TDESKKLVMV NEFICQKLSL TTDELLGRNP LTFIAKKYRL
EYLSEIQKHI SYDDTILDSR MDLTMTLPSN ETIKVEMAFS TLIFEKKKLV ITAITDITER
KRLETQLRIL ASTDPLTGAY NRRCFNELSQ KSMSSTERQE QEFTILLIDL DFFKSINDKF
GHAAGDDVLI ETVKAINTCI RESDILGRYG GEEFVVALPN SDNKKAREVA NRIRLCIENM
VVKTQGHDIK LTASIGLATS SGGHQLEKQI NQADTYLYYA KDNGRNQVVD HKIYHANSKL
CR
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