| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3135 |
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| Symbol | |
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| ID | 6117454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3845726 |
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| End bp | 3847381 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641634680 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_001761501 |
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| Protein GI | 170727475 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0142161 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATGA CACAAAGACG AGCCACAGCT TCTGAAGAGG CACTACTGCG CATCTTCACC
GTCCCTGAAG CCCCTGATTC CACCTTGAGT GTCATCGAAC AAAATATCTC CCAGAACCTA
ATGGGCTTTC TGCAGGAGAG TGTCGTGGCG GTCGAAAAGC CTCTATCTGA GATTGAGCGA
GATTTCCAAC AACATCAGAT CCCCTCGGCG CCGCAGTTTG TCTCTGATTA CGCCGACGAT
ATGATGAAAA CCTTGGTCGC CCACTCAGTA CATACCTCGG CTCCTAGTTT TATCGGGCAT
ATGACCTCAG CCCTTCCCTA TTTTGTCCTA CCGCTGTCTA AGATGATGGT AGGGTTAAAC
CAGAACTTGG TAAAAATCGA AACATCCAAA GCCTTTACTC CTCTGGAGCG TCAAGTCTTA
GGCATGATGC ATCATCTTAT CTACAGTGAG AGTGATGAGT TTTATCAAAG CTGGATGCAC
AGTGCTAACT ACTCGCTGGG GGCTTTTTGT TCTGGCGGTA CAGTGGCCAA TATCACAGCG
CTCTGGACCG CTCGTAACCA ACTATTAAAG GCTGATGGCG ACTTTAAAGG GGTATCGGCT
CAAGGTTTAG TGAAAGGGCT ACGCCATTAT GGTTATGACG ATTTGGCAAT CTTAGTATCT
CAGCGTGGCC ACTATTCACT GGCCAAAACC GCCGATCTAC TCGGCATAGG CCGTGAAAAT
ATCATTCAGA TCCCAACATC GTCTGATAAC AAGGTCGATG TGAGTAAGAT GCGCGAGATG
GCAGCTAAGC TCAATGATGA CAACATCAAG GTGATGGCAA TTGTCGGTGT TGCTGGCACG
ACTGAAACCG GCAATATCGA TCCCTTAGAT GAGTTAGCCA CCTTAGCATC TGAGCTAAAT
TGTCATTTCC ATGTTGATGC AGCATGGGGC GGCGCATCGC TGCTATCAAA TAAGTATCGT
CACCTGCTTA AAGGGATAGA GCGAGCGGAC TCAGTCACCA TAGATGCACA CAAACAGATG
TACGTGCCTA TGGGTGCGGG TATGGTTATC TTTAAAGATC CCGCTTTTGC CAACGCCATT
AAACATCATG CAGAATATAT TCTTAGAAAA GGCTCTAAAG ATTTAGGCAG TCAGACATTG
GAGGGCTCTC GCCCTGGCAT GGCGATGCTG GTTCATGCTT GTCTTCAGGT GATCGGTCGC
GACGGTTACG AGATATTAAT TAACAATAGC TTAGAGAAGG CGCGATATTT TGCCGATCTG
ATAAAACAAC ATCAAGACTT TGAGCTGGTA TCAGAGCCTG AACTGTGTCT ACTCACCTAC
CGCTACGTAC CAAAGTCAGT TCAAATGGCT ATGGCACAAG CCAGAGAGAA CAAAGATGTT
CAATCCCTTA TCGAATTTAA CCGTTTATTA GATGGCCTCA CTAAATTTGT GCAGAAACGC
CAACGAGAGC AGGGAACCTC TTTTGTCTCC CGTACTCGAA TCAACCCAGA AGCAGGCATA
GTGGATATAA AGTCTGTGGT ATTTAGGGTC GTACTCGCCA ATCCATTAAC TACCCATGAA
ATATTAGCTC AAGTCCTAAG CGAGCAAAGT GAGATAGCCA ATCAAGATAA TAAGTTTCTG
CCGCAGCTAT TACAGTTAGC TAACTTAAAA AATTAA
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| Protein sequence | MSMTQRRATA SEEALLRIFT VPEAPDSTLS VIEQNISQNL MGFLQESVVA VEKPLSEIER
DFQQHQIPSA PQFVSDYADD MMKTLVAHSV HTSAPSFIGH MTSALPYFVL PLSKMMVGLN
QNLVKIETSK AFTPLERQVL GMMHHLIYSE SDEFYQSWMH SANYSLGAFC SGGTVANITA
LWTARNQLLK ADGDFKGVSA QGLVKGLRHY GYDDLAILVS QRGHYSLAKT ADLLGIGREN
IIQIPTSSDN KVDVSKMREM AAKLNDDNIK VMAIVGVAGT TETGNIDPLD ELATLASELN
CHFHVDAAWG GASLLSNKYR HLLKGIERAD SVTIDAHKQM YVPMGAGMVI FKDPAFANAI
KHHAEYILRK GSKDLGSQTL EGSRPGMAML VHACLQVIGR DGYEILINNS LEKARYFADL
IKQHQDFELV SEPELCLLTY RYVPKSVQMA MAQARENKDV QSLIEFNRLL DGLTKFVQKR
QREQGTSFVS RTRINPEAGI VDIKSVVFRV VLANPLTTHE ILAQVLSEQS EIANQDNKFL
PQLLQLANLK N
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