Gene Swoo_3112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3112 
SymbolclpX 
ID6117428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3812586 
End bp3813866 
Gene Length1281 bp 
Protein Length426 aa 
Translation table11 
GC content43% 
IMG OID641634654 
ProductATP-dependent protease ATP-binding subunit ClpX 
Protein accessionYP_001761478 
Protein GI170727452 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1219] ATP-dependent protease Clp, ATPase subunit 
TIGRFAM ID[TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000637271 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000401572 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCGATA ACAAAAGTAC AGGTGATAGT GGGAAACTAC TCTACTGCTC TTTTTGTGGA 
AAGAGCCAAC ATGAGGTAAG AAAACTCATC GCTGGTCCTT CGGTGTACGT TTGCGATGAG
TGTGTAGAGC TCTGCAACGA CATCATCAGG GAAGAGATTA AAGAGATCTC ACCGAAACAA
GATCAAGACA AGTTACCGAC TCCACACGAG TTGAGAGCGC ATCTAGATGA TTATGTAATT
GGACAAGAGA AAGCGAAGAA AGTGCTTTCT GTTGCCGTTT ATAATCACTA TAAGCGTTTG
AAAAATGCTG GTCCTAAAGA TGGTGTAGAG TTAGGTAAAA GTAATATCTT GCTGATAGGC
CCAACCGGTA GCGGTAAAAC TTTATTGGCA GAAACTCTTG CCCGTTTTCT GAATGTTCCT
TTCACCATGG CTGATGCCAC AACACTGACC GAAGCAGGTT ATGTGGGTGA AGATGTTGAG
AACATCATTC AGAAATTACT ACAAAAGTGT GACTATGATG TTGAAAAGGC ACAGCGCGGT
ATCGTTTATA TCGATGAGAT CGATAAAATC AGCCGTAAGT CTGACAACCC ATCAATTACA
CGTGATGTAT CGGGTGAAGG TGTACAGCAA GCCCTACTTA AATTGATTGA GGGAACCATT
GCAGCTGTTC CACCTCAAGG TGGACGCAAG CACCCACAGC AGGAGTTTTT ACAGGTTGAT
ACCTCTAAGA TCCTCTTCGT TTGTGGTGGC GCTTTCTCAG GTTTAGAAAA AGTGATTGAG
CAGCGCTCTC ACACTGGAAC GGGTATCGGC TTTGGTGCTC AGGTGAAGGG TGAGGACGAC
AAGGCAACTA TCTCTGATAC CTTGATGCAG GTTGAACCTG AAGATCTGGT TAAGTATGGT
TTGATCCCTG AGTTCATCGG TCGTCTTCCT GTCCTAGCAA CATTGGCTGA GCTTGACGAT
GCAGCTTTGA TTCAGATCTT ATCTGAGCCA AAGAATGCAC TGACTAAGCA GTTTGCAGCA
CTGTTTGAGA TGGAAGATGT TGAACTTGAG TTCCGTGAAG ATGCACTTAA AGCGATAGCT
TTAAAAGCTA AAACACGTAA AACAGGTGCA CGTGGTCTAC GTTCAATTGT TGAGGGTATT
TTACTCGATA TTATGTATGA CCTGCCTTCA ACTGATAATG TGGCAAAAGT TGTCATCGAT
GAATCAGTGG TAAAAGGGGA GTCAACTCCT ATACTCATCT ATGAAAATAG TGAGTCTCAA
GCTGCTAGCG CTGAACAATA A
 
Protein sequence
MSDNKSTGDS GKLLYCSFCG KSQHEVRKLI AGPSVYVCDE CVELCNDIIR EEIKEISPKQ 
DQDKLPTPHE LRAHLDDYVI GQEKAKKVLS VAVYNHYKRL KNAGPKDGVE LGKSNILLIG
PTGSGKTLLA ETLARFLNVP FTMADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQRG
IVYIDEIDKI SRKSDNPSIT RDVSGEGVQQ ALLKLIEGTI AAVPPQGGRK HPQQEFLQVD
TSKILFVCGG AFSGLEKVIE QRSHTGTGIG FGAQVKGEDD KATISDTLMQ VEPEDLVKYG
LIPEFIGRLP VLATLAELDD AALIQILSEP KNALTKQFAA LFEMEDVELE FREDALKAIA
LKAKTRKTGA RGLRSIVEGI LLDIMYDLPS TDNVAKVVID ESVVKGESTP ILIYENSESQ
AASAEQ