Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3112 |
Symbol | clpX |
ID | 6117428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3812586 |
End bp | 3813866 |
Gene Length | 1281 bp |
Protein Length | 426 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641634654 |
Product | ATP-dependent protease ATP-binding subunit ClpX |
Protein accession | YP_001761478 |
Protein GI | 170727452 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000637271 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000401572 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGATA ACAAAAGTAC AGGTGATAGT GGGAAACTAC TCTACTGCTC TTTTTGTGGA AAGAGCCAAC ATGAGGTAAG AAAACTCATC GCTGGTCCTT CGGTGTACGT TTGCGATGAG TGTGTAGAGC TCTGCAACGA CATCATCAGG GAAGAGATTA AAGAGATCTC ACCGAAACAA GATCAAGACA AGTTACCGAC TCCACACGAG TTGAGAGCGC ATCTAGATGA TTATGTAATT GGACAAGAGA AAGCGAAGAA AGTGCTTTCT GTTGCCGTTT ATAATCACTA TAAGCGTTTG AAAAATGCTG GTCCTAAAGA TGGTGTAGAG TTAGGTAAAA GTAATATCTT GCTGATAGGC CCAACCGGTA GCGGTAAAAC TTTATTGGCA GAAACTCTTG CCCGTTTTCT GAATGTTCCT TTCACCATGG CTGATGCCAC AACACTGACC GAAGCAGGTT ATGTGGGTGA AGATGTTGAG AACATCATTC AGAAATTACT ACAAAAGTGT GACTATGATG TTGAAAAGGC ACAGCGCGGT ATCGTTTATA TCGATGAGAT CGATAAAATC AGCCGTAAGT CTGACAACCC ATCAATTACA CGTGATGTAT CGGGTGAAGG TGTACAGCAA GCCCTACTTA AATTGATTGA GGGAACCATT GCAGCTGTTC CACCTCAAGG TGGACGCAAG CACCCACAGC AGGAGTTTTT ACAGGTTGAT ACCTCTAAGA TCCTCTTCGT TTGTGGTGGC GCTTTCTCAG GTTTAGAAAA AGTGATTGAG CAGCGCTCTC ACACTGGAAC GGGTATCGGC TTTGGTGCTC AGGTGAAGGG TGAGGACGAC AAGGCAACTA TCTCTGATAC CTTGATGCAG GTTGAACCTG AAGATCTGGT TAAGTATGGT TTGATCCCTG AGTTCATCGG TCGTCTTCCT GTCCTAGCAA CATTGGCTGA GCTTGACGAT GCAGCTTTGA TTCAGATCTT ATCTGAGCCA AAGAATGCAC TGACTAAGCA GTTTGCAGCA CTGTTTGAGA TGGAAGATGT TGAACTTGAG TTCCGTGAAG ATGCACTTAA AGCGATAGCT TTAAAAGCTA AAACACGTAA AACAGGTGCA CGTGGTCTAC GTTCAATTGT TGAGGGTATT TTACTCGATA TTATGTATGA CCTGCCTTCA ACTGATAATG TGGCAAAAGT TGTCATCGAT GAATCAGTGG TAAAAGGGGA GTCAACTCCT ATACTCATCT ATGAAAATAG TGAGTCTCAA GCTGCTAGCG CTGAACAATA A
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Protein sequence | MSDNKSTGDS GKLLYCSFCG KSQHEVRKLI AGPSVYVCDE CVELCNDIIR EEIKEISPKQ DQDKLPTPHE LRAHLDDYVI GQEKAKKVLS VAVYNHYKRL KNAGPKDGVE LGKSNILLIG PTGSGKTLLA ETLARFLNVP FTMADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQRG IVYIDEIDKI SRKSDNPSIT RDVSGEGVQQ ALLKLIEGTI AAVPPQGGRK HPQQEFLQVD TSKILFVCGG AFSGLEKVIE QRSHTGTGIG FGAQVKGEDD KATISDTLMQ VEPEDLVKYG LIPEFIGRLP VLATLAELDD AALIQILSEP KNALTKQFAA LFEMEDVELE FREDALKAIA LKAKTRKTGA RGLRSIVEGI LLDIMYDLPS TDNVAKVVID ESVVKGESTP ILIYENSESQ AASAEQ
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