| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3102 |
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| Symbol | |
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| ID | 6117418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3799910 |
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| End bp | 3801559 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641634644 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001761468 |
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| Protein GI | 170727442 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.522775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000411022 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAATGC TGATAAAGCG TCTATCGGGA TACGCCACAC TCACTTGCTT GGTGATACTT
GCAGCAGGGT GTGGGCCCAA AAAAGTTCCG CCTGGTTTGG TCTATTGCTC TGAGGGAAAC
CCAGAGTCTT TTAATCCTCA GTTAGTGACC TCTGGGACCA CTGTTGACGC TACATCACAG
CAGATTTATA GCAGTCTAAT CGATTACGAT GGTAAATCTG CTCAAATTGT TCCCTCATTG
GCGAGCAAAT GGCAAATTAG TGATGATGAG CTTACCTACA CTTTCACCCT AAGAGAGAAC
GTCAGCTTTC ACCAATCTAG CACCTTTACA CCAACGCGGT ATTTTAATGC CGATGATGTG
CTATTTTCTT TTAATCGCAT TATCGATCCT CAGCACCCTT TTCATCTTGT TTCCAAAACG
GGTTACCCCT TTTTTCAAAG TATCGGCTTT GATAAACAGA TCAACCAAAT CGAAAAAGTC
TCAGATAATG AAGTCGCTTT TCACCTAAAC ACCCCAGATG CTTCATTCCT CTCTAATCTC
GCTTCCGGTT TTGCCGTGAT CCTTTCACAG GAGTATGCAC AGATACTGGC AACACGAGAG
CAGAAAGCGC AAATAGATAG GTTACCCATT GGCACTGGGC CATTTCAGCT CAACAAATAT
GTTAAGAATG AGTATATTCG TTACCACAGA AATGAGCAGT ATTGGCGAAC CTTGCCAAAA
TCAGAGCTAC TGGTTTTTGA TATCACCCCT AAGAGTACCT CTAGGCTAGC AAAACTTATC
ACTGGTGATT GCAGCGTGTC GGCGCTCCCC AAAGCCGGAG AGCTCGAAGT GGTTTTGGCT
CATGATGAGC TAGAGATAGA TTCTCAACCT GGTTTTAACG TCGCTTTCTG GGCTTTTAAT
ACCCAAAAAC CTCCTTTCGA TGACATGAGA GTCAGGCGTG CTTTGGCTCA TGCCGTCGAT
AGAGAAAATA TTCTGCGCGC CGTATACCAA AAAACAGCAG TTAAGGCCAC AGGACTTCTG
CCTCCCATGT CTTGGGCATA TTCGGAAAAT AAACCGATTA TCAATTATGA TCCTCAAGAA
GCCAGACGCT TACTCGAAGA GGCGGGGATC ACTGAGCTAA CCATCGATAT TTGGGCGATG
CCTGTTGCCC GAATTTATAA CCCTAATGCC CTAAAGGCTG CAGAGTTAAT CCAAGCCGAT
TTGGCCAATA TCGATGTAAA AGTGAATATA ATCAGTTATG ACTGGAGTGT GTTTAATCAA
AAACTAAGCC AACGTGATTA TGATTCTGTG CTCATTGGGT GGACCGCAGA TAATAGCGAC
CCTGACAACT TCTTCACCCC TATTTTAAGC TGTGCATCTG TCTCATCTAG CAGTAATCGC
TCCCGTTGGT GTCATCCAGA TCTGGACTTA ATCTTAGCTC AAGCGCGGGC AACTACGGAT
AGGGAGGAGA GAAAAAACTT CTACCAAGCC GCTGAAGCCA TTTTTGCTTC AAAACTTCCT
ATGCTTCCTC TCGCTCACGC AACTAAGCTC GCCTTTAAGC ATAAAGGTGT CAATGAGATG
AAATTGACCC CATTTGGTGG GATCTCATTT ACTGGTACTG AGATAGAAAC AAGTGAAACC
ACAACGGCAC AAGAAGAGGC ATTACAATAA
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| Protein sequence | MRMLIKRLSG YATLTCLVIL AAGCGPKKVP PGLVYCSEGN PESFNPQLVT SGTTVDATSQ
QIYSSLIDYD GKSAQIVPSL ASKWQISDDE LTYTFTLREN VSFHQSSTFT PTRYFNADDV
LFSFNRIIDP QHPFHLVSKT GYPFFQSIGF DKQINQIEKV SDNEVAFHLN TPDASFLSNL
ASGFAVILSQ EYAQILATRE QKAQIDRLPI GTGPFQLNKY VKNEYIRYHR NEQYWRTLPK
SELLVFDITP KSTSRLAKLI TGDCSVSALP KAGELEVVLA HDELEIDSQP GFNVAFWAFN
TQKPPFDDMR VRRALAHAVD RENILRAVYQ KTAVKATGLL PPMSWAYSEN KPIINYDPQE
ARRLLEEAGI TELTIDIWAM PVARIYNPNA LKAAELIQAD LANIDVKVNI ISYDWSVFNQ
KLSQRDYDSV LIGWTADNSD PDNFFTPILS CASVSSSSNR SRWCHPDLDL ILAQARATTD
REERKNFYQA AEAIFASKLP MLPLAHATKL AFKHKGVNEM KLTPFGGISF TGTEIETSET
TTAQEEALQ
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