| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3095 |
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| Symbol | |
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| ID | 6117411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3793254 |
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| End bp | 3794432 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641634637 |
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| Product | methionine gamma-lyase |
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| Protein accession | YP_001761461 |
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| Protein GI | 170727435 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01328] methionine gamma-lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000416356 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAGACA AATGGAAATT AGCCACAAAA GTGATCCATG CAGGACATAT TAGAAGTAGT
TCTGGCGCAC TGGTAACCCC TTTATGCCAA AGTGCGACTT TTGTTTTTGA TAGTGCTGAA
CAGGGAGGTG AGAGATTTGC CGGCGATCAA CCCGGTTATA TCTACACCCG CTTAGGTAAT
CCAACCACAG CGGAACTAGA ACGTAAGATG GCTGCACTTG AAGGTGCTGA GGCCGCTGTT
GCGACAGCGT CGGGCATGGC TGCTGTGTCA TCTGCGCTGT TGGCCAATCT GCAGCATGGC
GATCATCTTG TGGCATCTAA GGCTGTATAT GGTTGCACTT TCTCCCTGAT GACAGCACAA
TTTTTACGAT TTGGCATCGA GGTTACCTTA GTCGATTTTA ATGACCTATC AGCCATTAAA
GAAGCGATTA AACCCACAAC CAAAGTGCTG TTTTGTGAAA CCCCGGTAAA TCCTCATTTA
GACGTATTCG ACTTAGATGC TATCGCAAAG ATTGCTCAAG CAAACAAGTT AGTGAGTATT
GTCGATAACA CCTTTATGAC CCCCCTGTTA CAGCAACCCT TGACCCATGG GATCGATATC
GTTGTTCATA GTGCGACCAA GTACCTTAAT GGTCATGGTG ATGTGATTGC TGGGGTGATA
TGCGGTAGCA ATGAGCAGAT AGAGCAGATT AAATATGAAA CCGTGAAGGA CTTGGGCGGT
GTGTTATCTC CCCATGATGC TTGGCTGATA CTGCGTGGTC TTAAGACGCT AGATGTAAGA
CTAGCCAGAC ATTGTGATAA TGCTGAATGC TTGGCGTATT ACCTGCTAAA CCATGAAAAA
GTGACTAAAG TGTATTACCC AGGTCTTGAG GGGCATAGTG GTTACCCACT GCTTGGTACT
CAGATGAAAA GAGCCGGTGG GGTGATTGCC TTCGAGCTAA ATGGCGCAAT GGAGCAGTCC
CTGCAGTTTA TTAACAGCTT AACGCTATTT TCTATTGCCG TTAGTTTAGG CGATGCCGAG
TCTCTTATTC AACATCCAGC TTCGATGACT CACTCCCCTT ACTCCGAACA GGAGAGGGAG
CTTGCTGGTA TTGGCGAGAG CTTATTGCGA ATATCTGTGG GACTGGAGTC TGTAGAAGAT
TTGATAAGTG ACTTAGAGCA GGCTTTGGCC TTGGTTTAG
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| Protein sequence | MQDKWKLATK VIHAGHIRSS SGALVTPLCQ SATFVFDSAE QGGERFAGDQ PGYIYTRLGN
PTTAELERKM AALEGAEAAV ATASGMAAVS SALLANLQHG DHLVASKAVY GCTFSLMTAQ
FLRFGIEVTL VDFNDLSAIK EAIKPTTKVL FCETPVNPHL DVFDLDAIAK IAQANKLVSI
VDNTFMTPLL QQPLTHGIDI VVHSATKYLN GHGDVIAGVI CGSNEQIEQI KYETVKDLGG
VLSPHDAWLI LRGLKTLDVR LARHCDNAEC LAYYLLNHEK VTKVYYPGLE GHSGYPLLGT
QMKRAGGVIA FELNGAMEQS LQFINSLTLF SIAVSLGDAE SLIQHPASMT HSPYSEQERE
LAGIGESLLR ISVGLESVED LISDLEQALA LV
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