| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3063 |
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| Symbol | avtA |
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| ID | 6117378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3753777 |
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| End bp | 3755039 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641634605 |
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| Product | valine--pyruvate transaminase |
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| Protein accession | YP_001761429 |
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| Protein GI | 170727403 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3977] Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0126603 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTTTT CTAAGTTTGG TGAAAAGTTT AATCGTTACT CAGGTATTAC CCGTTTAATG
GATGATCTCA ATAAGGGGCT GCGAACTCCG GGTGCCATTA TGCTAGGCGG CGGTAACCCA
GGTGCGATCC CTGAAATGCT GGATTACTTT CATCAAGCAA CTGCTGATAT GTTAGAAAAT
GGCGAGCTGG TATCAGCCTT AGGCAACTAC GATGGCCCCC AAGGAAAGAA TACATTTCTT
ACCGCACTCG CAGCACTTCT AAAAGAACAA TATGGTTGGG ATATTAGCGA GAAAAATATT
AGCCTGACTA ACGGCAGCCA AAGCGCTTTT TTCTACCTGT TTAATCTATT GGCGGGAAAA
CAACTTGATG GCAGCCATAA AAAGATCCTT CTGCCACTCG CCCCCGAATA TATTGGTTAC
AGTGATGCCG GACTCGATGA AGACATTTTT ATCTCCTACC GGCCTGAAAT CGAACACTTA
GATAACCGTA TGTTCAAATA TCACGTGGAC TTTGAGCACC TTGAAGTTGA TGATTCAGTG
GCCGCTATCT GCGTCTCCAG ACCAACAAAC CCGACTGGCA ACGTGCTGAC CGACACAGAG
ATATTTAAAC TCGATAAACT TGCTCAGGAC AATGGCATTC CCCTAATTAT CGATAACGCT
TACGGTACTC CCTTCCCCAA TATTATATTT GAGGAGGTGA CGCCATTTTG GAATAAGAAC
ACCATACTCT GCATGAGCTT GTCCAAACTT GGGTTACCTG GGGTTCGCTG CGGGATCGTG
ATTGCCAATG AAGAGATCAC TCAAGCCCTG ACCAATTTAA ATGGGATCAT TAGCCTCGCA
CCCGGTGGCT TTGGCCCCGC CATCGCCAAA CATATGATTG ACTCAGGCGA TCTGTTGCGA
CTAAGTGAAT CTGTCATTAA GCCTTTTTAC CAAGACAGAG CCAAGTTTGC CGTCTCTTTA
TTACAAGAAT CTATCACGGA TAACCGTTTT AAAATCCACA AACCAGAAGG CGCTATCTTC
CTCTGGTTAT GGTTTGATGA GCTGCCAATC TCAACCATGG AACTCTATGA GCGATTAAAA
GCGCGCGGTG TATTGATAGT TCCTGGTGAT TATTTCTTCT TTGGCCAGAA GGAGCAGTCA
GAGGAGAAGT GGGAGCATAG TCATCAATGC CTGCGCATGA ACTATGTTCA AGATGAAGCC
AAGATGCGAG ATGGGATTGC GATTATCGCA GAAGAGGTGA TAAAGGCTTA CGCCAACGGT
TGA
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| Protein sequence | MQFSKFGEKF NRYSGITRLM DDLNKGLRTP GAIMLGGGNP GAIPEMLDYF HQATADMLEN
GELVSALGNY DGPQGKNTFL TALAALLKEQ YGWDISEKNI SLTNGSQSAF FYLFNLLAGK
QLDGSHKKIL LPLAPEYIGY SDAGLDEDIF ISYRPEIEHL DNRMFKYHVD FEHLEVDDSV
AAICVSRPTN PTGNVLTDTE IFKLDKLAQD NGIPLIIDNA YGTPFPNIIF EEVTPFWNKN
TILCMSLSKL GLPGVRCGIV IANEEITQAL TNLNGIISLA PGGFGPAIAK HMIDSGDLLR
LSESVIKPFY QDRAKFAVSL LQESITDNRF KIHKPEGAIF LWLWFDELPI STMELYERLK
ARGVLIVPGD YFFFGQKEQS EEKWEHSHQC LRMNYVQDEA KMRDGIAIIA EEVIKAYANG
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