Gene Swoo_3060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3060 
Symbol 
ID6117375 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3748139 
End bp3751195 
Gene Length3057 bp 
Protein Length1018 aa 
Translation table11 
GC content48% 
IMG OID641634602 
ProductSMC domain-containing protein 
Protein accessionYP_001761426 
Protein GI170727400 
COG category[L] Replication, recombination and repair 
COG ID[COG0419] ATPase involved in DNA repair 
TIGRFAM ID[TIGR00618] exonuclease SbcC 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.496903 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0254363 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACCCC TTAGGCTAGC AATGTCAGCA TTCGGTCCCT TTGCCTCGAC TCAAGAGGTC 
GATTTTTCAG CATTGGGGAC TAATCCGCTC TTTTTAATCA ACGGACCTAC TGGTGCAGGT
AAGACGACCA TTTTAGATGC TATCTGCTTT GCTCTTTATG GTAAAACCAC AGGTGATGAG
CGCGAAGGCA GCCAGATGCG CTGCGATGTT GCCGATGATA ATTTACTGAC GGAGGTGACC
TTTAGTTTTT GCTTAGGTGA GGCGCAGTAT CGTATTCGTC GAGTGCCCGA ACAGGATAGG
GCTAAAAAAA GTGGTGAAGG TTTTACGGTG CAAAAGCCGG AGGCACAACT TTATCGCATA
GAGCAAGATG GCACTGAGCA TCTGCTGGTG GCAAGTAAAG TCTCTGAGGC AACCGCCGAG
ATTGAACAGC TTACTGGCTT AGATGCCGAT CAATTTCGTC AGGTGATGGT TCTACCTCAG
GGGAAGTTCC GCGAGCTGTT AATGGCGGAC TCGAAAGAGA GAGAGAAGAT ATTTAGTCAG
CTGTTTCAGA CGCAAATTTA TCGAAAAATT GAAGATAAAT TAAAGCAGCA AGCATCGACG
ATTAGAAATG ATGTCAAAGA GCAGCGGGCA AGACGAGATG GCATTATGCA AAATGTCGAG
CTTGAGTCTG ATGAGGCGTT AAATAGTGAG TTATCACAGC TAACGCCGCA GCTTGAACAA
GCGTTAGCGA GTAAAGAGCA GGCAAAAACA GCATTGATAG AGGCTAATAA GCAGTGTGAG
TCGGCTAAGT TGCTTATCAG TGATTTTGAT ACCCAAGCCA AATTACAGCA GACAGCAGTG
TTACTCGCCG AGCAGAAAGT CGATATTGAG CTGCGACAAT CCCGGATTGA AAATGGCCAA
AAGGCGCAGC AGATAAAACC TGTGTTAGAG GTGTCACAAT CTCGAGAGTC GGAGATGCTT
CAAACCCAGA GCCTTGTGAC ACAAGTTCAA TCTGCCAAGT TGCAAAGTGA GCAAGCTCTT
ACACTTGCCC AAGCTAAGTT TAATACTTTG GGCAGTGAGG AGGGTAAGCT ACAAAAAGCC
CAGAGTGAAG AGATGGGCTT GACCCAGTTA CGTCCTCAAC TTCAAGGCCT AGATAACCTA
CAAAGAGAGC TAAATCAAGC TTGTATTAAA CTTGAGCAGG CAAAAGCGAA AGGGATAAAA
GGCAAAGAGG CGTTAAGTGC GCTGCAACTT GAGAGAGTAA CGGCTGAGCT GCAGGTTCCT
CAACTTGAGC AGCAAGCAGC AGAGCAGCTG AATGCACAGC AAGCGTTAAC CGCTCATCAG
GACACATTTG AGCGTTATCA GCAGTGGCAA CTTGTTGCCA TTAATGCCGA TAAAACTCAG
CAAGCACTGT TGTTGGCTGA AGAGAAAGGT AAACAACTTC GTCTCGATGC TAAAGCAAAA
GAGCATGATT TTGATCAGCT GCAACTTATC TGGCATCGTG GCCAAGCCAG TGTATTGGCA
CAAAAACTCA ATCCAGGTGA GCCTTGCCCA GTATGTGGCA GTGCAGAACA CCCCAGTCCC
GCTTTGAGTG AGCAATCATT GCCCTCAGAG GAGCAGTTGG AGCTAAGCAA GCAGGCGTGT
GAAGCGGCAA ATCAAGCGTT AAATCAAGTT ATCTCCGACT ACAAAGGGAT AAAAGCACAG
CTGCAGGAGC AGGTGAAGTT AAGGGATGAA TATCAATCTA GGCTAGGAGA GTGGTCGTCT
CACTCAGCTG ATTCATTACA GGCTCATCAG CAGCAGTTAC AGCTTCAGGT CAATCAAGCT
AATGAAGCGG CCCAAACACT CACCAAGCTT AGGTTACAAC TACAAGACTC GCAGGCGCGG
GAACGGGGGC TACAGGATAA ACTTGAAGCC GAGCGAGAGC ATTATCATGG ACTACAAAGT
CGTGCCTCTG AGCTTCAAGG TAAACTGGAG CAGGTGTTAG GGGGGATCCC AGAGCAATAT
TGCAGTTTAG AGCAGCTTGA GAGTGCTATA GCGCAAGTGA AGCAGACTCT TTTAGCGCAG
CAGCAGATAA TTGATACCAT TCGCCAAGCT CACACCCAAG CGCTTGAACA AGATGCGGCG
CAGAAAGCCG CGTTGGCGTC GGCTCAGTCA AGTTTTGAAC AGGCTCAAAT TCAAAGTGAC
AAAGCACAAG CTGAGCTAAG TGAGCACTTA TTGGCGTCAG GTTTTAAGGA TAAAGAGGCA
TTAACTCATG CTTTACTCTC GAGCGAAGAG TTGAAGCTGA TTAGCGATGA GATAGCCCAA
TATCAGCAGA GCTGTATCGC TAATCAAACC TCCTTAAATC AACTCGATGA GAAGCTGGCC
GCGCAAGTCA GACCTGAATT GACAACGCTT GAAGCTGGCT TGGCTGTCGC CCAGACTAAA
CAGGGAGAAG CAGAAAACAG CTGGCAAACT CTGCAGAGCC GTGTGACGCA ACTAACACAT
ACCCAGAAGC AGTTAAAAGA GGCGGATGAT CAGGCGAAGA AGCTTGAAGA TGAGTACGCC
ATTATCGGCA CACTATCGGA TGTGGCTAAT GGACAAACGG GCAATAAGAT AAGCCTACAA
CGTTTCGTGT TAAGTGTGCT GCTTGATGAT GTTCTGCTTG AGGCGAGTCA ACGTCTGCAG
CTAATGAGTA AAGGGCGTTA CCGCTTAATA CGTAAGGAGG ACAGGGCGAA GGGAAACAAA
GCTTCTGGTT TAGAGCTGGA AGTGGAGGAT GCTTACACCT CTAAGGTGCG ACCCGTGGCG
ACATTAAGTG GCGGAGAGAG CTTTATGGCT GCATTGTCGA TGGCATTGGG ATTGTCTGAT
GTTGTGCAGG CTTATGCTGG TGGGATTAAG CTAGATACGC TGTTTATTGA CGAAGGATTT
GGCAGTTTAG ATCAAGACTC ACTGGATCTT GCTATTCGCA CCTTGATGGA CCTTCAATCT
GCTGGACGTA TGATTGGTGT TATCTCCCAC GTCTCTGAGA TGAAAGAGCA GATAGGCACA
CGTATCGATA TCCTTAAAAC CGCGCTTGGC AGTAAAACGT CGATAGTATT GCCCTAA
 
Protein sequence
MRPLRLAMSA FGPFASTQEV DFSALGTNPL FLINGPTGAG KTTILDAICF ALYGKTTGDE 
REGSQMRCDV ADDNLLTEVT FSFCLGEAQY RIRRVPEQDR AKKSGEGFTV QKPEAQLYRI
EQDGTEHLLV ASKVSEATAE IEQLTGLDAD QFRQVMVLPQ GKFRELLMAD SKEREKIFSQ
LFQTQIYRKI EDKLKQQAST IRNDVKEQRA RRDGIMQNVE LESDEALNSE LSQLTPQLEQ
ALASKEQAKT ALIEANKQCE SAKLLISDFD TQAKLQQTAV LLAEQKVDIE LRQSRIENGQ
KAQQIKPVLE VSQSRESEML QTQSLVTQVQ SAKLQSEQAL TLAQAKFNTL GSEEGKLQKA
QSEEMGLTQL RPQLQGLDNL QRELNQACIK LEQAKAKGIK GKEALSALQL ERVTAELQVP
QLEQQAAEQL NAQQALTAHQ DTFERYQQWQ LVAINADKTQ QALLLAEEKG KQLRLDAKAK
EHDFDQLQLI WHRGQASVLA QKLNPGEPCP VCGSAEHPSP ALSEQSLPSE EQLELSKQAC
EAANQALNQV ISDYKGIKAQ LQEQVKLRDE YQSRLGEWSS HSADSLQAHQ QQLQLQVNQA
NEAAQTLTKL RLQLQDSQAR ERGLQDKLEA EREHYHGLQS RASELQGKLE QVLGGIPEQY
CSLEQLESAI AQVKQTLLAQ QQIIDTIRQA HTQALEQDAA QKAALASAQS SFEQAQIQSD
KAQAELSEHL LASGFKDKEA LTHALLSSEE LKLISDEIAQ YQQSCIANQT SLNQLDEKLA
AQVRPELTTL EAGLAVAQTK QGEAENSWQT LQSRVTQLTH TQKQLKEADD QAKKLEDEYA
IIGTLSDVAN GQTGNKISLQ RFVLSVLLDD VLLEASQRLQ LMSKGRYRLI RKEDRAKGNK
ASGLELEVED AYTSKVRPVA TLSGGESFMA ALSMALGLSD VVQAYAGGIK LDTLFIDEGF
GSLDQDSLDL AIRTLMDLQS AGRMIGVISH VSEMKEQIGT RIDILKTALG SKTSIVLP