Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3060 |
Symbol | |
ID | 6117375 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3748139 |
End bp | 3751195 |
Gene Length | 3057 bp |
Protein Length | 1018 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641634602 |
Product | SMC domain-containing protein |
Protein accession | YP_001761426 |
Protein GI | 170727400 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.496903 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0254363 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACCCC TTAGGCTAGC AATGTCAGCA TTCGGTCCCT TTGCCTCGAC TCAAGAGGTC GATTTTTCAG CATTGGGGAC TAATCCGCTC TTTTTAATCA ACGGACCTAC TGGTGCAGGT AAGACGACCA TTTTAGATGC TATCTGCTTT GCTCTTTATG GTAAAACCAC AGGTGATGAG CGCGAAGGCA GCCAGATGCG CTGCGATGTT GCCGATGATA ATTTACTGAC GGAGGTGACC TTTAGTTTTT GCTTAGGTGA GGCGCAGTAT CGTATTCGTC GAGTGCCCGA ACAGGATAGG GCTAAAAAAA GTGGTGAAGG TTTTACGGTG CAAAAGCCGG AGGCACAACT TTATCGCATA GAGCAAGATG GCACTGAGCA TCTGCTGGTG GCAAGTAAAG TCTCTGAGGC AACCGCCGAG ATTGAACAGC TTACTGGCTT AGATGCCGAT CAATTTCGTC AGGTGATGGT TCTACCTCAG GGGAAGTTCC GCGAGCTGTT AATGGCGGAC TCGAAAGAGA GAGAGAAGAT ATTTAGTCAG CTGTTTCAGA CGCAAATTTA TCGAAAAATT GAAGATAAAT TAAAGCAGCA AGCATCGACG ATTAGAAATG ATGTCAAAGA GCAGCGGGCA AGACGAGATG GCATTATGCA AAATGTCGAG CTTGAGTCTG ATGAGGCGTT AAATAGTGAG TTATCACAGC TAACGCCGCA GCTTGAACAA GCGTTAGCGA GTAAAGAGCA GGCAAAAACA GCATTGATAG AGGCTAATAA GCAGTGTGAG TCGGCTAAGT TGCTTATCAG TGATTTTGAT ACCCAAGCCA AATTACAGCA GACAGCAGTG TTACTCGCCG AGCAGAAAGT CGATATTGAG CTGCGACAAT CCCGGATTGA AAATGGCCAA AAGGCGCAGC AGATAAAACC TGTGTTAGAG GTGTCACAAT CTCGAGAGTC GGAGATGCTT CAAACCCAGA GCCTTGTGAC ACAAGTTCAA TCTGCCAAGT TGCAAAGTGA GCAAGCTCTT ACACTTGCCC AAGCTAAGTT TAATACTTTG GGCAGTGAGG AGGGTAAGCT ACAAAAAGCC CAGAGTGAAG AGATGGGCTT GACCCAGTTA CGTCCTCAAC TTCAAGGCCT AGATAACCTA CAAAGAGAGC TAAATCAAGC TTGTATTAAA CTTGAGCAGG CAAAAGCGAA AGGGATAAAA GGCAAAGAGG CGTTAAGTGC GCTGCAACTT GAGAGAGTAA CGGCTGAGCT GCAGGTTCCT CAACTTGAGC AGCAAGCAGC AGAGCAGCTG AATGCACAGC AAGCGTTAAC CGCTCATCAG GACACATTTG AGCGTTATCA GCAGTGGCAA CTTGTTGCCA TTAATGCCGA TAAAACTCAG CAAGCACTGT TGTTGGCTGA AGAGAAAGGT AAACAACTTC GTCTCGATGC TAAAGCAAAA GAGCATGATT TTGATCAGCT GCAACTTATC TGGCATCGTG GCCAAGCCAG TGTATTGGCA CAAAAACTCA ATCCAGGTGA GCCTTGCCCA GTATGTGGCA GTGCAGAACA CCCCAGTCCC GCTTTGAGTG AGCAATCATT GCCCTCAGAG GAGCAGTTGG AGCTAAGCAA GCAGGCGTGT GAAGCGGCAA ATCAAGCGTT AAATCAAGTT ATCTCCGACT ACAAAGGGAT AAAAGCACAG CTGCAGGAGC AGGTGAAGTT AAGGGATGAA TATCAATCTA GGCTAGGAGA GTGGTCGTCT CACTCAGCTG ATTCATTACA GGCTCATCAG CAGCAGTTAC AGCTTCAGGT CAATCAAGCT AATGAAGCGG CCCAAACACT CACCAAGCTT AGGTTACAAC TACAAGACTC GCAGGCGCGG GAACGGGGGC TACAGGATAA ACTTGAAGCC GAGCGAGAGC ATTATCATGG ACTACAAAGT CGTGCCTCTG AGCTTCAAGG TAAACTGGAG CAGGTGTTAG GGGGGATCCC AGAGCAATAT TGCAGTTTAG AGCAGCTTGA GAGTGCTATA GCGCAAGTGA AGCAGACTCT TTTAGCGCAG CAGCAGATAA TTGATACCAT TCGCCAAGCT CACACCCAAG CGCTTGAACA AGATGCGGCG CAGAAAGCCG CGTTGGCGTC GGCTCAGTCA AGTTTTGAAC AGGCTCAAAT TCAAAGTGAC AAAGCACAAG CTGAGCTAAG TGAGCACTTA TTGGCGTCAG GTTTTAAGGA TAAAGAGGCA TTAACTCATG CTTTACTCTC GAGCGAAGAG TTGAAGCTGA TTAGCGATGA GATAGCCCAA TATCAGCAGA GCTGTATCGC TAATCAAACC TCCTTAAATC AACTCGATGA GAAGCTGGCC GCGCAAGTCA GACCTGAATT GACAACGCTT GAAGCTGGCT TGGCTGTCGC CCAGACTAAA CAGGGAGAAG CAGAAAACAG CTGGCAAACT CTGCAGAGCC GTGTGACGCA ACTAACACAT ACCCAGAAGC AGTTAAAAGA GGCGGATGAT CAGGCGAAGA AGCTTGAAGA TGAGTACGCC ATTATCGGCA CACTATCGGA TGTGGCTAAT GGACAAACGG GCAATAAGAT AAGCCTACAA CGTTTCGTGT TAAGTGTGCT GCTTGATGAT GTTCTGCTTG AGGCGAGTCA ACGTCTGCAG CTAATGAGTA AAGGGCGTTA CCGCTTAATA CGTAAGGAGG ACAGGGCGAA GGGAAACAAA GCTTCTGGTT TAGAGCTGGA AGTGGAGGAT GCTTACACCT CTAAGGTGCG ACCCGTGGCG ACATTAAGTG GCGGAGAGAG CTTTATGGCT GCATTGTCGA TGGCATTGGG ATTGTCTGAT GTTGTGCAGG CTTATGCTGG TGGGATTAAG CTAGATACGC TGTTTATTGA CGAAGGATTT GGCAGTTTAG ATCAAGACTC ACTGGATCTT GCTATTCGCA CCTTGATGGA CCTTCAATCT GCTGGACGTA TGATTGGTGT TATCTCCCAC GTCTCTGAGA TGAAAGAGCA GATAGGCACA CGTATCGATA TCCTTAAAAC CGCGCTTGGC AGTAAAACGT CGATAGTATT GCCCTAA
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Protein sequence | MRPLRLAMSA FGPFASTQEV DFSALGTNPL FLINGPTGAG KTTILDAICF ALYGKTTGDE REGSQMRCDV ADDNLLTEVT FSFCLGEAQY RIRRVPEQDR AKKSGEGFTV QKPEAQLYRI EQDGTEHLLV ASKVSEATAE IEQLTGLDAD QFRQVMVLPQ GKFRELLMAD SKEREKIFSQ LFQTQIYRKI EDKLKQQAST IRNDVKEQRA RRDGIMQNVE LESDEALNSE LSQLTPQLEQ ALASKEQAKT ALIEANKQCE SAKLLISDFD TQAKLQQTAV LLAEQKVDIE LRQSRIENGQ KAQQIKPVLE VSQSRESEML QTQSLVTQVQ SAKLQSEQAL TLAQAKFNTL GSEEGKLQKA QSEEMGLTQL RPQLQGLDNL QRELNQACIK LEQAKAKGIK GKEALSALQL ERVTAELQVP QLEQQAAEQL NAQQALTAHQ DTFERYQQWQ LVAINADKTQ QALLLAEEKG KQLRLDAKAK EHDFDQLQLI WHRGQASVLA QKLNPGEPCP VCGSAEHPSP ALSEQSLPSE EQLELSKQAC EAANQALNQV ISDYKGIKAQ LQEQVKLRDE YQSRLGEWSS HSADSLQAHQ QQLQLQVNQA NEAAQTLTKL RLQLQDSQAR ERGLQDKLEA EREHYHGLQS RASELQGKLE QVLGGIPEQY CSLEQLESAI AQVKQTLLAQ QQIIDTIRQA HTQALEQDAA QKAALASAQS SFEQAQIQSD KAQAELSEHL LASGFKDKEA LTHALLSSEE LKLISDEIAQ YQQSCIANQT SLNQLDEKLA AQVRPELTTL EAGLAVAQTK QGEAENSWQT LQSRVTQLTH TQKQLKEADD QAKKLEDEYA IIGTLSDVAN GQTGNKISLQ RFVLSVLLDD VLLEASQRLQ LMSKGRYRLI RKEDRAKGNK ASGLELEVED AYTSKVRPVA TLSGGESFMA ALSMALGLSD VVQAYAGGIK LDTLFIDEGF GSLDQDSLDL AIRTLMDLQS AGRMIGVISH VSEMKEQIGT RIDILKTALG SKTSIVLP
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