Gene Swoo_3037 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_3037 
Symbol 
ID6117352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3722053 
End bp3723378 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content45% 
IMG OID641634579 
Productaromatic hydrocarbon degradation membrane protein 
Protein accessionYP_001761403 
Protein GI170727377 
COG category[I] Lipid transport and metabolism 
COG ID[COG2067] Long-chain fatty acid transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000400429 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0267167 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAGT ATTTTAACAA GACAATACTA GCTGTAGCGG TAACACTTGC CAGTTCACAA 
GCAATAGCAG CAGGTTTTCA ACTTAACAGT CAATCAGCAA CAGGCCTTGG CCGAGCTTTT
GCCGGCGATG CAGTGATTGC TGATAATGCG TCAGTACTAT CGCGTAATCC AGCAGCAATG
GCTCTGTTTG ATGAAAAATC ATTATCGGTT GGCGCGGCGT ATGCCGACTT AGACGTCAAT
ATCTCTGACG TGTCAACGCC ACTAGGAAAT TACGGTAGTG CAGAAGGCGT AGCTGAAAGC
AAACTTATCC CTAACTTCTA CTACATCCAA CCTATTAACG ATAAATGGGC ATTTGGTGTC
GCAGGCTTTA GTAATTTTGG TACTGGTACC GACTTAACTA GCCTTGCTAA TAGCAACCCA
ACAATGGACA ACGGCACGGT TGTCCCAGCA CCAGCACCGG TTGATCTATT GGGTAACACT
GAAATCGTGA CCATGAATTT CAACGCAAGT TTATCTTACC GCTTCAATGA ACATTTCAGC
GTTGGTGCTG GTGTAGATAT CATTTATGGT GAGGGTAACT TAAGCCGTGA GGGTAACCTT
CCATTCGACG ATAACGGCAG CATGGTGCCA GTTTCTTTAG TCGATGTCGA AGCTGATGGT
ATTGCATTTG GTGGTATTCT TGGTGCCGTT TACGAGTTTA ACGCCGACCA CCGTTTAGGC
ATGAGCTACC GTTTCAGCCC AGAGTTTAAA GCGACTGGCG ATGTAAACAT GACACAACCA
GGTGTTGGTA CCATCGCATT CGATGAGATC AACATTCCGA TGCCAGATAT CTTCCAAGTT
GCTGGCTTTC ATCAACTAAC TGAAAAGTTC GCATTACACT ATACAGCCCA GCTTACCACA
TGGGGTGATT TCCATGAGAT CACAGTCACA GATGGTCAGC TAGCAAACGG CACCGCTGCC
GGTGATGCAG TACTTAAGCA GTACGCTTGG GAAGATTCTT GGTTATTCAG TGTTGGCGGT
ACATACACAA TCAACGAAAA CTGGAAAGTG CGTGCAGGTT ACATGCATGA TCAAGGCGTT
GTTGGTGATG TAAGCTCATT ATCTATCCCT GATTCAGACC GAAACTGGTA CACAGCAGGT
GTTAGTTATA ACCTAAGCAC ACAATCGACT ATCGATATGG GTATCGCCTT TGTCCGCGGT
GAAGATGTTC ATGTTACCGA AAATAGTTCA GTTATCGCAT CAATCCCTGG TTTAAATGGT
GATGTGACAG CTTATACTCG CTCTGATGCT ATCTACTACT CAGTGCAGTA CAGCTACCAG
TTCTAA
 
Protein sequence
MMKYFNKTIL AVAVTLASSQ AIAAGFQLNS QSATGLGRAF AGDAVIADNA SVLSRNPAAM 
ALFDEKSLSV GAAYADLDVN ISDVSTPLGN YGSAEGVAES KLIPNFYYIQ PINDKWAFGV
AGFSNFGTGT DLTSLANSNP TMDNGTVVPA PAPVDLLGNT EIVTMNFNAS LSYRFNEHFS
VGAGVDIIYG EGNLSREGNL PFDDNGSMVP VSLVDVEADG IAFGGILGAV YEFNADHRLG
MSYRFSPEFK ATGDVNMTQP GVGTIAFDEI NIPMPDIFQV AGFHQLTEKF ALHYTAQLTT
WGDFHEITVT DGQLANGTAA GDAVLKQYAW EDSWLFSVGG TYTINENWKV RAGYMHDQGV
VGDVSSLSIP DSDRNWYTAG VSYNLSTQST IDMGIAFVRG EDVHVTENSS VIASIPGLNG
DVTAYTRSDA IYYSVQYSYQ F