Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3026 |
Symbol | fadJ |
ID | 6117341 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3707501 |
End bp | 3709642 |
Gene Length | 2142 bp |
Protein Length | 713 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641634568 |
Product | multifunctional fatty acid oxidation complex subunit alpha |
Protein accession | YP_001761392 |
Protein GI | 170727366 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
TIGRFAM ID | [TIGR02440] fatty oxidation complex, alpha subunit FadJ |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.144673 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.316904 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATAAGA CATTTAATTT AGCTAAACGT GAAGATGGCA TTGCCGTACT GACCATGGAT GTTCCTGGCG AGAGTATGAA TACACTGCGG GCCGAATTTG GACCTGAGAT TAGCCAAGTG TTAGCTGATA TCAAGGGTGA TAGCAGCATT AAAGGTTTAG TGCTTATCTC TGGTAAAAAA GACTCTTTTG TTGCTGGCGC CGATATCTCT ATGTTGGATG CTTGTGAAAC GGCTGCAGAT GCAAAGCAAC TCTCTCAGCA GGGACATATT GTTTTTAATG AACTTGAGTC ACTCTCTATT CCTGTTATTG CTGCCATTAA CGGTGCTTGT TTGGGGGGCG GTTTAGAGCT GGCTCTTGCT TGTCATCAGC GTATATGTAG TTTAAACAGT AAAACCATGA TGGGGGTGCC TGAAGTTCAG CTAGGACTCC TTCCTGGTGG TGGCGGTACA CAAAGGTTGC CTAGGTTAGT TGGGATCACA TCTGCATTGG ATATGATGCT AACGGGCAAA CAGTTGCGTC CAAAGCAGGC GCTTAAACTG GGTTTGATTG ATGACATGGT GCCAGAATCG ATACTGCTGC AAACTGCGGT AGAGATGGCA TTGAAAGGTA AGCGTGTCTC GTCAAAACCA AAACAGTCAA TGATCAATCG TGTGCTTGAG GGCACAAATG CTGGCCGCAG TATTATTTTT GATCAAGCGG GCAAGCAGGT ACAGAAGAAG ACACAGGGTA ATTATCCTGC ACCCGCTAAA ATTATCGATT GTGTACGACA AGGGATGGCT AAAGGCATAG TTAAAGGGCT TGAAGTTGAG GCAAACCATT TTGCGGATCT TGTGGTCTCG AAAGAGTCTG AAGCATTAAG AAGTATCTTT TTTGCCACCA CTGAGATGAA AAAAGAGAGT GGGGCAGGTG ATGCTAAGCC ACGAAGTGTC AAGAAGGTGA TGGTACTTGG TGGTGGTTTG ATGGGGGGCG GTATCGCCTC TGTGACGACG ACTAAGGCTA AGATCCCAGC TCGAGTCAAA GATATCAGCG AGCAGGGACT AAGCAACGCA CTGTCCTATG CTTACAAGTT ATTGGATAAA GGAGTTAAGC GTCGTCACAT GACGCCAGCA GTGAGAGATA ATCTCATGTC CTTGATGACA ACAACAACTG AGTATAAAGG CATAAAAGAC GCTGATATTG TAGTTGAAGC TGTATTTGAA GATCTAAATC TTAAACACCA GATGGTTAAA GATGTTGAGC GTGAATGTGG CGAAAATACT ATCTTTGCAT CGAACACCTC CTCTTTGCCA ATTGCCCAAA TAGCGCAAGC TGCGACTCGA CCTGAAAATG TTATCGGTTT GCACTATTTT TCGCCAGTAG AGAAGATGCC ATTGGTTGAG GTTATTGCTC ATAAGAAAAC CTCTGCCGAA ACGATTGCAA CGACAGTTGC TTTTGCACGT AAACAAGGTA AGACACCAAT TGTTGTACAA GATGGTGCTG GTTTTTACGT GAATCGAATT TTAGCTCTGT ATATGAACGA AGCTGCGCAA CTACTTCTTG AAGGCAGAGC TGTTGAAGCC TTAGATAAGG CGTTAGTTAA GTTTGGCTTC CCCGTTGGAC CTATGACGCT ATTGGATGAA GTTGGCATTG ATGTCGGTGC TAAGATATCG CCTATTCTAG AGGGAGAACT TGGAGCACGC TTTTTAGCGC CAGCTGCATT TGATAAGTTA TTGGCAGATG AGCGTAAAGG TCGTAAGAAT AACAAAGGCT TCTACCTTTA TGGCAGTAAA AGTAAGAAGA AAACTAAGCA AGTAGATAGT TCAGTTTATG GCGTGTTGGG GTTAAGAACA CCAGAAAATA GCAATGAGCA TTCTAGCGAG CTTGCTGAAA TGTCACAGCG CTGTGTTGTG CAGATGCTTA ATGAAGCAGT TCGTTGTTTA GAGGAGGGGA TTATTGCCTC ACCAAGAGAT GGTGACATCG GCGCTATTTT TGGGATAGGT TTCCCTCCTT TCTTAGGGGG GCCATTCCAC TACATAGATA CACTAGGTGC TGATGCTTTA GTGTCTAAAC TCGAAGCTTA TCAGGCTGAG TTTGGTGATA GATTTACACC TTGTGATCAG CTAAGAAAGA TGGCTAAAGA TGGTGTTAAG TTCTTTGGTT AG
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Protein sequence | MDKTFNLAKR EDGIAVLTMD VPGESMNTLR AEFGPEISQV LADIKGDSSI KGLVLISGKK DSFVAGADIS MLDACETAAD AKQLSQQGHI VFNELESLSI PVIAAINGAC LGGGLELALA CHQRICSLNS KTMMGVPEVQ LGLLPGGGGT QRLPRLVGIT SALDMMLTGK QLRPKQALKL GLIDDMVPES ILLQTAVEMA LKGKRVSSKP KQSMINRVLE GTNAGRSIIF DQAGKQVQKK TQGNYPAPAK IIDCVRQGMA KGIVKGLEVE ANHFADLVVS KESEALRSIF FATTEMKKES GAGDAKPRSV KKVMVLGGGL MGGGIASVTT TKAKIPARVK DISEQGLSNA LSYAYKLLDK GVKRRHMTPA VRDNLMSLMT TTTEYKGIKD ADIVVEAVFE DLNLKHQMVK DVERECGENT IFASNTSSLP IAQIAQAATR PENVIGLHYF SPVEKMPLVE VIAHKKTSAE TIATTVAFAR KQGKTPIVVQ DGAGFYVNRI LALYMNEAAQ LLLEGRAVEA LDKALVKFGF PVGPMTLLDE VGIDVGAKIS PILEGELGAR FLAPAAFDKL LADERKGRKN NKGFYLYGSK SKKKTKQVDS SVYGVLGLRT PENSNEHSSE LAEMSQRCVV QMLNEAVRCL EEGIIASPRD GDIGAIFGIG FPPFLGGPFH YIDTLGADAL VSKLEAYQAE FGDRFTPCDQ LRKMAKDGVK FFG
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