| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3022 |
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| Symbol | |
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| ID | 6117337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3701871 |
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| End bp | 3706196 |
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| Gene Length | 4326 bp |
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| Protein Length | 1441 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 641634564 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001761388 |
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| Protein GI | 170727362 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.161295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCCTA ACGCGCTTAT GAAAATAATT ACAACATTAC TGTTGGCCCT CTGTATTTTC
GGCCAATCGG TTGCTGTAGA GTCTAACTCT ATAACTAAAG AGAAAGTTAT AAAGCCTATT
CACACCCCAA AACTTCTAAA AATAAAAAGC TACGGTGTAT CGGAAGGATT GTCTCAAAGT
GCAGTCACTT CACTCGTTGA AGATGCTGAT GGTTTTGCTT GGATTGGCAC TTTGAATGGA
CTCAATAGAT TCGATGGTGA TGAATTCAAA CAATATTTTT CTTTCAAAGA AAAGAACTCT
CTACCAAGTT CCTTTATTAG AAGCCTATAC TTCTCGGAAA AATATGGTCT ATTCATTGGG
ACTGATAAAG GATTAACTGT TTATAACAAA ACTGATGATG ATTTTACTCT AATTAACAAC
CTACTTTCTC AACAAATATG GAATATAACT GAACACAATG ACCAAATTAT AGTTGGAACA
GAGAACGAAA TAATTTATTT AAACAATAAA CTAGAATATG TAAAATCTAT AGATGGTGAT
TTCGGAGGTA TTAAAAAAAT TATTTTCTCC AACAACTTAA TATATGTAAG GAATTACATG
GGGGATATAA TAGCAATTGA CAACATTGAA AAAAAAGTAA TATCCGACAA TACTAACGAC
ATTGTAGATG CGCACGGAAA AGTAATAATA ATAAAGCCAG ATGGTGTTTT TGAAGTATTA
GGTAAAAAAG TAAGAAAAAT AAATAGCAAT CACTACTCCA ACCTTACAGC ACTACCCAAT
AAATATATAT CAATAAAAGA ACAAAACATC TATTCCATTA GTACAGACTT CTCTCAAACT
AGTATTGACA GATTGGATAT AAAGAACATA GAAGTTACTA ACCCTCACGT AATAAGAGGA
AAAAAAACAA ACTATATTAC AACTCATAAC ATAGGATTAT TAGTTAATTA CGATTATAAC
AATACAATAT CAACAATAGA TATAGAAGAC AAAAACATTT GGTCTATAGC TAAAGATCTA
AAATCAAATT TATTTATTGC TACTGGTTCA AAATATATAA ACTTATATAG TAAATCTAAT
AAGATAGTTG CTAAGTACAA CACTGAGGCA GAGGGACCAA AACAAGTTAC AACACTAAAA
GATAGTTTAT TCATAACGAC AACGGAAGGG TTACTGTCAA TTGACAAATA TAGTAAAAAT
AGAGAAGTGC TAAGTCCCGG CCCATTCTTT GCCATTCATA AATCACAATT TGATGAAGCA
GTTTATGCTG GTACAACTGA CGGAAAAGTT ATTGAGGTTT CTGAAAATAA ACAAATTATT
ATGGAACACA GTGTAGATAT TGGAAACCCA GTTTTCGATA TTAAAAAATC TAGCACATCT
CTTTGGGTTG CGACGCAAGG TGGACTTTTT AAAATTCAAG ATGGAAAAAT TGAAAATATT
TTTAACAAAG GTATCGTCAT TAGTATTTCT CTATCGACAA ACAATGAAGA TATTTATTTT
GGAACTGAGA CGTCACTATT AAAATTCACA AGCAAAAACA AAAAAATAGA AACTATCTAC
TCAAACAATA GGCCAATATA CTCTATTGTC ACTGACACCG ATTACATATA CTCCACTTCG
ATAAAAGAGC TAGTAGTCAC ACAAATAGTT GATAATAAAA CGATTTCCCT TTCAGATACT
TATGGAAGTC AAGATGAGTA TAATGCACAA TCAATTTTAG ACTTTAACAA CACAATATAC
ATCGGAGGTA TTTCAGGTAT TAGTGCGATG TCAAAAGTAG TTATTGATAA GATATTCTCA
TCATCAAAAG CACCTAAAGC CAATATCAAT GAGCTATTAG TTTTTAATAT CCCCGTTAAC
ATAGGAAGCT CGATTTTAAA AGAAAATATT TCCTCGACAA AAAAAATAAT ATTAAAATAT
TCTGACTACC CTTTTACATT AAAATTTAAC AGCCCTGGCA ATGGTAGTGA AAAAATTGAT
TATATATATC AAATGCAGGG ACTATCTGAA TCTTGGATCC ACTCTGAGGG TATAAACTCA
GCGACTTATA CAAACCTCTC TTCTGGTGAG TACACCTTTA ATATTTATGC TTTTGATCCC
TTGACTCATA ACCAAGGAGA AATAAAGAGC CTAAATATAT TAATAACCCC TCCATGGTGG
TTATCTAAGC AAGCAAAATT GGTTTACTTC ATTATCACTC TCATTATTTC AGCTGTGATA
GTTCAAGGTA TACTTCGCCG CCGTGAAGTT CAGAAAAAGA TAGCTAAATC AGAGGAGAGG
CTAAAGCTTT CTCTCTGGGG AAGTGGCGAT GAGATGTGGG ATTGGGATAT CGAAACAGGA
CAGATATACC GCTCTAATAT CTGGGGCTCT CTCGAATTCC CAAAAGATGG ACAAAGGTCT
GGCGATGCCG ATGAGGAGAG TAATATTCAC CCCATGGATC AAGACCGTGT CACTAAGGCG
CTGAACAGCC ATTTCGATGG TAACAGTGAT CATTTTGAAG CAGCATACCG AGTAAAGGGG
AAGTCTGATG AATGGGTGTG GATCTTAGAC AGAGCAAAAA TAGTGGAACG AGATGAGAAA
GACAACCCTC TGCGTATGAC AGGCACTATC AAAAATATTA ATAACTTTAA AAATGCTGAG
GAGCAACTTC GTCTGTTTGA ACGTGCGATT GCCAATATCT CCGAAGGTAT GTTTATTTTA
GACAATAACT TTATCTTTGT AGAGGTCAAC GAAGCCTGTT GTGAACTAAG CCTTATCCCT
AAAGAGCAGT TTATTGGCTC ACTTTTTAAG TTTAACCTCT ACCCTGACAG CTATTCAGAG
CAGATACGTT CAATTCTTCA TCAGCAAGGT AGCTGGAGCA ATGATGTTGA ATCAGCAAAA
GGAGACGGCA CTAGTTTCCT CATGGAGCTA ACGGTTGATG CCATCTATGA CGAATTAGGA
CAACTATCTC ATTATGTCGG TGTATTTTCC GATATATCTC GCCGTAAACT GCAAGAGGAG
GAGCTAAGGA AGCTTACCAA TAATGATCTT TTGACTAACC TGCCAAACCG CTCAAGTTTA
ATGGTGACCT TAGGCAACTT GGTAAAGAGA GATACTCATC ACACCCTTAT GGTTCTAGAT
CTTGATAACT TCAAAAAGAT CAATGACTCC ATGGGACATC AGATCGGTGA TGAACTACTT
ATAAAAGTAG CTAAACGTAT CGAAGCCGCT GTCCCCTACC ACACAAGTAT CTATCGCTTG
GGTGGCGATG AATTTGCGAT ATTAGTTGAT AATAATCCTG ACATTGGCTC CAGTGCAGTG
ATCGCAAATA ATGTTATAGA TGCTTTCGCC AGCCCGTTTG AGCTCACCTC AGAAAAAGTC
GTAGTGGGCC TTAGTATCGG TATTGTGCTC TATCCTGAGG ATGATCAAAA CGAACAAGCA
TTGCTACGCA AAGCAGATAT TGCGATGTAT CACGCTAAAT CAGGTGGAGG CAACCGCTAC
CAATTCTACT CAGAATCGAT TAACCGAAAT GCAATAAGGC AACTGGAAGT TGAGAACCTT
ATTCGTGAAG GTTTACGTGA TGATCTGTTT GAAGTCTATT ACCAGCCTAA AATAGCACTA
AAAACAGGAA GAATGGCGGG AATGGAAGCC TTAGTCAGGC TAAATCATCC TGAACACGGA
TTAATTCCAC CCAGCGAGTT TATTCCTTTA GCTGAAGAAA ACGGCTTAAT TGTCGATATC
GGTGATTTAG TGATGAGAAA GGCATGCTTT GCTACTCAAA AATGGCGAAG TTTAGGCTTG
TTTGATGGTC GAGTCGCTGT CAATTTATCA TCATACCAAT TTGCCCTCCC CGATCTTCAG
CAGCGTATTG AGTCAATATT ACGACTCACT CAGCTACCAG CAGCGAATTT AGAGTTAGAG
ATCACTGAAG GAACTGTAAT TAAGCAACCC GAGAAAGCCA TTAAGGTGAT GCAACAGCTA
TCAAAAATGG GAGTCAGTTT AGCTTTAGAT GATTTTGGTA CAGGCTACTC TTCACTCTCA
TACCTAAAAC GTTTTCCAAT TCATACGCTG AAAATTGACA AAGCATTTGT CGATGATATC
GATAAATCTG ACAGAGATCT GAAGATGGTC GACTCAATTA TTACTATCGC TCACAACATG
GGACTATCGG TTGTCGGTGA AGGGGTTGAA GATGCCTCTC AATTGAGCAT ACTAAAAGCA
CTAAAATGTG AAGAGATACA AGGATTTCTC TTTAGTAAAG CGGTCACAGA AACTCAGTTC
AGTGAGCTAC TAGAGAAGAA TTTTATTGAA CCTGACATAG TACAAAAAAA CACAAAAGCA
ATCTAG
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| Protein sequence | MMPNALMKII TTLLLALCIF GQSVAVESNS ITKEKVIKPI HTPKLLKIKS YGVSEGLSQS
AVTSLVEDAD GFAWIGTLNG LNRFDGDEFK QYFSFKEKNS LPSSFIRSLY FSEKYGLFIG
TDKGLTVYNK TDDDFTLINN LLSQQIWNIT EHNDQIIVGT ENEIIYLNNK LEYVKSIDGD
FGGIKKIIFS NNLIYVRNYM GDIIAIDNIE KKVISDNTND IVDAHGKVII IKPDGVFEVL
GKKVRKINSN HYSNLTALPN KYISIKEQNI YSISTDFSQT SIDRLDIKNI EVTNPHVIRG
KKTNYITTHN IGLLVNYDYN NTISTIDIED KNIWSIAKDL KSNLFIATGS KYINLYSKSN
KIVAKYNTEA EGPKQVTTLK DSLFITTTEG LLSIDKYSKN REVLSPGPFF AIHKSQFDEA
VYAGTTDGKV IEVSENKQII MEHSVDIGNP VFDIKKSSTS LWVATQGGLF KIQDGKIENI
FNKGIVISIS LSTNNEDIYF GTETSLLKFT SKNKKIETIY SNNRPIYSIV TDTDYIYSTS
IKELVVTQIV DNKTISLSDT YGSQDEYNAQ SILDFNNTIY IGGISGISAM SKVVIDKIFS
SSKAPKANIN ELLVFNIPVN IGSSILKENI SSTKKIILKY SDYPFTLKFN SPGNGSEKID
YIYQMQGLSE SWIHSEGINS ATYTNLSSGE YTFNIYAFDP LTHNQGEIKS LNILITPPWW
LSKQAKLVYF IITLIISAVI VQGILRRREV QKKIAKSEER LKLSLWGSGD EMWDWDIETG
QIYRSNIWGS LEFPKDGQRS GDADEESNIH PMDQDRVTKA LNSHFDGNSD HFEAAYRVKG
KSDEWVWILD RAKIVERDEK DNPLRMTGTI KNINNFKNAE EQLRLFERAI ANISEGMFIL
DNNFIFVEVN EACCELSLIP KEQFIGSLFK FNLYPDSYSE QIRSILHQQG SWSNDVESAK
GDGTSFLMEL TVDAIYDELG QLSHYVGVFS DISRRKLQEE ELRKLTNNDL LTNLPNRSSL
MVTLGNLVKR DTHHTLMVLD LDNFKKINDS MGHQIGDELL IKVAKRIEAA VPYHTSIYRL
GGDEFAILVD NNPDIGSSAV IANNVIDAFA SPFELTSEKV VVGLSIGIVL YPEDDQNEQA
LLRKADIAMY HAKSGGGNRY QFYSESINRN AIRQLEVENL IREGLRDDLF EVYYQPKIAL
KTGRMAGMEA LVRLNHPEHG LIPPSEFIPL AEENGLIVDI GDLVMRKACF ATQKWRSLGL
FDGRVAVNLS SYQFALPDLQ QRIESILRLT QLPAANLELE ITEGTVIKQP EKAIKVMQQL
SKMGVSLALD DFGTGYSSLS YLKRFPIHTL KIDKAFVDDI DKSDRDLKMV DSIITIAHNM
GLSVVGEGVE DASQLSILKA LKCEEIQGFL FSKAVTETQF SELLEKNFIE PDIVQKNTKA
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