| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3005 |
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| Symbol | |
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| ID | 6117320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3680111 |
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| End bp | 3682162 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641634547 |
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| Product | cytochrome c biogenesis protein transmembrane region |
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| Protein accession | YP_001761371 |
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| Protein GI | 170727345 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4232] Thiol:disulfide interchange protein
[COG4233] Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.123614 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.852427 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATATTTG GTTTCTGGTT ACTTTTACTA TCCTCCTCAG TGTTTGCTCA GAGCACAGGT
TGGATAGAAA ACCCTAACCA TCCACCAGTA AAGATTCGAT TTATGCTGAC GGGGGAGTTC
GATCCTGTCT CAAAAACCTT ACCTGCAGTG CTTGAGGTTA AACTTGAGGA TGATTGGAAA
ACTTACTGGC GCAGTCCAGG AGAGGGGGGG ATCGCACCAA GCATAAAGTG GGATGATTCT
AGTAATTTGA ACCATGTTGA TTGGTCATGG CCCGTTCCTG AGCAGTTTTC ACTACTGGGT
TTACAAACCT TAGGCTACAA GGGGGATGTG GTTTTTCCTC TGTTTCTTAC CTTAGATGAT
GTTAATGCTG ATACTCATCT TAACGGTAAA GTTAGGCTGT CTTCTTGTAC AACTATCTGT
GTGCTAACCG ATTATCAGAT TGAATTAGAT TTCAATTTTG ACACGTTAAA GTCTGATCCC
GAAGCCATGT TTGCCTACAA CAAGGCAGTC TCTAAAGTGC CAGTGAAACT CGATGAAGAT
GAGTCAGCTT CTTTCATTGA TCTTGGTTGG GACAGTGCTA AATCGCAATT ACAGATAGTG
TTAAAGGACT CTCAGTGGCA ACGACCTGAG ATAATGATTG ATGGCGAACC TGACACTGTG
TTTAAGCTTG GTAGCCTAAA CCGAGTTGAA GGTGATAATG GAAGTCAACA ATGGGTGGCA
ACATTCAATG GCGAGAGCTG GCTAGGTGAG CCAGAGCTGT TAGGCAAAGC ACTTAATATT
ACTGTAGTGG ATGCTCAACG TGCACTTGAG TATTCTGCGC CAGTAGTGGA AACACTCATA
GTGGGGAGCT CCAGCTCCAT TTGGACTATG ATGTTGTTTG CCCTGCTTGG TGGCCTTATT
TTGAATGTAA TGCCTTGTGT TTTACCTGTC TTAGGCATGA AACTCAGCGC TATTGTTGCC
ACTCCTAACC TTGAACGCAG ACAGATCCGT CAACAGTTTC TCGCTTCTGC TTTAGGGATA
TTAGTGTCAT TTTGGTTATT GGCAGGCTTC ATTTTAGTGC TTAAATTCAC CGGGCAGGCA
ATAGGCTGGG GCGTGCAGTT CCAAAATCCT TGGTTTATCG GCTTTATGGC GCTGGTGACC
TCAATATTTG CACTGAACAT GCTTGGAGCA TTTGAGATTA ATCTACCGTC AAGTTTTCAA
ACTAAGCTTG CCACAACAGG CGGTAATGAT AACCGTGGTC ATTTCCTGCA GGGGATGTTT
GCTACCTTGC TTGCAACTCC ATGTAGCGCT CCTTTCTTAG GAACTGCTGT GGCATTCGCA
TTTGGAGCTC CAGTTGCTGG GTTAGTGGTT ATTTTCACTG CACTTGCCTT GGGAATGGCG
TTGCCTTGGC TTCTTGTTGC AGCATTCCCT CAGGTAGCAA GGTATTTTCC CAAGCCTGGC
CGCTGGATGA ATATTGTTAA ACTGCTCTTC TCTGGAATGC TGTTAATCAC AAGTTTGTGG
TTAATTAGTC TGTTAACCAG TTTTATCTCT GCTACTTACC TATGGGGTCT TGGCGCTGCT
CTGATCTTTA TCTTTATGTT TATCATGGCA AAAAAATATG GCTTACCAGC GCTGATTGCA
ACTTTTAGCA TTGGGTTGAT ACTCGTTGTG GTTGCTGCGT TTATGACCTC TGAAAACTGG
GCAAGGCCTT TGCCAACCGA TCTTCACTGG ACAGCGCTAA ATGAAGAGTT AATTGCCAAG
CAGGTTGCAG AGGGGAAAAC GGTTTTTGTT GACGTTACGG CCGACTGGTG CATCACCTGT
AAGGCTAATA AGGTTGGTGT GGTGCTGCAA GACCCTGTCT ATAGCTTACT CAAGCAAGAT
AACATTGTGA CCATGAAAGG TGACTGGACT ACGCCTTCTG CTGAAATTAC TGACTACTTA
CAGAGTCACA ATCGTTTTGG AGTACCCTTT AACGTGGTGT ATGGCCCCAA GGCTCCTAAG
GGGATAGAGC TGCCCGTTAT CTTATCTGCT AAAGAGGTCG TAGCTGCTAT CGAAAGAGCG
TCTGGCACAT AG
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| Protein sequence | MIFGFWLLLL SSSVFAQSTG WIENPNHPPV KIRFMLTGEF DPVSKTLPAV LEVKLEDDWK
TYWRSPGEGG IAPSIKWDDS SNLNHVDWSW PVPEQFSLLG LQTLGYKGDV VFPLFLTLDD
VNADTHLNGK VRLSSCTTIC VLTDYQIELD FNFDTLKSDP EAMFAYNKAV SKVPVKLDED
ESASFIDLGW DSAKSQLQIV LKDSQWQRPE IMIDGEPDTV FKLGSLNRVE GDNGSQQWVA
TFNGESWLGE PELLGKALNI TVVDAQRALE YSAPVVETLI VGSSSSIWTM MLFALLGGLI
LNVMPCVLPV LGMKLSAIVA TPNLERRQIR QQFLASALGI LVSFWLLAGF ILVLKFTGQA
IGWGVQFQNP WFIGFMALVT SIFALNMLGA FEINLPSSFQ TKLATTGGND NRGHFLQGMF
ATLLATPCSA PFLGTAVAFA FGAPVAGLVV IFTALALGMA LPWLLVAAFP QVARYFPKPG
RWMNIVKLLF SGMLLITSLW LISLLTSFIS ATYLWGLGAA LIFIFMFIMA KKYGLPALIA
TFSIGLILVV VAAFMTSENW ARPLPTDLHW TALNEELIAK QVAEGKTVFV DVTADWCITC
KANKVGVVLQ DPVYSLLKQD NIVTMKGDWT TPSAEITDYL QSHNRFGVPF NVVYGPKAPK
GIELPVILSA KEVVAAIERA SGT
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