Gene Swoo_2999 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2999 
Symbol 
ID6117314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3674937 
End bp3676622 
Gene Length1686 bp 
Protein Length561 aa 
Translation table11 
GC content48% 
IMG OID641634541 
Productgluconate 2-dehydrogenase (acceptor) 
Protein accessionYP_001761365 
Protein GI170727339 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.634456 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAGA GTAGAAAGTT TGATATCTGT ATTATTGGTA GCGGTGCGGG CGCAGGTCCC 
ATTGCTTATG AGCTTGCGAA AGCTGGGTAC AAGGTTGGTG TACTCGAAAA GGGCAGGTGG
TTTAAAGAGA CAGATTTCTT CAAGGATGAG CAGCTAGGTC GCCATAGTGT ATTTCGTTCT
CAGTTTAAGG ATGAGCGACA TACCCTTGAG GAGCCTAATG GTGATGGGAG CTGGTCATCA
GATACCACGT CACAGTTTTG GGGAGGGAAT ATTGTCGGCG GCGCCTCTAA CTTTATGAGT
GCGTATTTTC ACCGTCTTAA ACCTCAAGAT TTTAGGTTAG TTTCTGAATA TGGCAATATT
GAGGGAGCAA ATACCGTTGA CTGGCCAATC AGTTACGATG AACTGGAGCC CTATTACACA
AAAGTAGAGC AGCTTGTTGG CGTATCGGGC AAAGTGGTTG AACATCCACA TTTAGAGCCT
CGCTCGAGTA AGGACTTCCC CTTTCCCCCA ACGGCTGAAC ATCCGGTTGC ACAACGATTC
GATAGCGCTT GTAAAGGCTT AAAGTTACAC CCTCTCCCAA TGGCGCGTGG CATTCTGTCT
CAGCCCTTTA ATGGTCGGCT TAGCTGCGAG TATTCAGGGT ATTGCGGTAG CTATGGTTGT
CATTCTGGGG CCAAGGCGAG TTCGCGAGCT GCCTTGTTAG ATACAGCGAC TAAAACTGGA
AACTGTGAAA TAGTCACTCA GGCTAAGGTA TACAGGCTCA ATACCGATGA CTCAGGTAAG
GTCAACTCGG TGGATTACTT TGACCTTACT GACAATGATA AGAGTGTTCG AGTGACTGCA
AACATTTTTG TGGTGGCTTG CTACGCCATC GAAAGTTCAC GCTTGTTGTT AAGTAGTCGA
GGGAAGAAGC ACCCTGATGG TATTGGGAAT AATCACGGCC AAGTGGGCAA GAATCTACAT
TGCTGTGCCG GTGGCACAGG CCACGGTGTG TTCGAGCTTG ATAAGTTAAA ATCCTTTGAA
GCGAAACAGC TTAAAACACG AGGGCCATTT TTCAATCGTG CTTTGCAAGA CTGGTACGAG
ATTGATGATG AAAGTGTATC TGATAAGCCG ATTAAAGGGG GCACACTGGA TTTTGTGTTC
GATCCACCGT CTCCTACCTC CGAGGTGTCA AGCCTCAAAT GGCAGGGAGA AAACCTGTTG
TGGGGCACAC CACTTAAACA GAGGATAAAG TCACATTTTA CTCAATCTAA AGACTTTAAG
TTTGAGGTTT TTTGCGATTG GCTGACCAAT GATGAGTGCT ATGTGAGCCT AGATCCCGAT
GAAAAGGACA GGTGGGGCCA GAGTGTGGCT AAGGTGCGGG CAGGTTTTCA TCCCCATGAT
GAGAGGGTAG CGCAATACTT GGTTGATCGC GGGATCGAGG TGATGAAAGC CATGGGGGCG
CACGAAGCAT GGGGCAATGT GTTTACTCAG CCAACCTCTA ATTTAGTCGC GGGGGGATGC
CGTTTTGGTG ACGACCCTAC AACCTCGGTG CTAGACAGAA ACTGTCGGGT ACATGATTGC
GATAATCTCT ATGTGACAGA TGGCAGCTTT ATGCCAAATG GTGGCTCGGT AACACCTACT
TTTACCATTT ATGCGAATGC CTTTCGGGTC GCTGATAGTA TTGTAGAGCG CTTTGCTAAG
GGCTAG
 
Protein sequence
MKQSRKFDIC IIGSGAGAGP IAYELAKAGY KVGVLEKGRW FKETDFFKDE QLGRHSVFRS 
QFKDERHTLE EPNGDGSWSS DTTSQFWGGN IVGGASNFMS AYFHRLKPQD FRLVSEYGNI
EGANTVDWPI SYDELEPYYT KVEQLVGVSG KVVEHPHLEP RSSKDFPFPP TAEHPVAQRF
DSACKGLKLH PLPMARGILS QPFNGRLSCE YSGYCGSYGC HSGAKASSRA ALLDTATKTG
NCEIVTQAKV YRLNTDDSGK VNSVDYFDLT DNDKSVRVTA NIFVVACYAI ESSRLLLSSR
GKKHPDGIGN NHGQVGKNLH CCAGGTGHGV FELDKLKSFE AKQLKTRGPF FNRALQDWYE
IDDESVSDKP IKGGTLDFVF DPPSPTSEVS SLKWQGENLL WGTPLKQRIK SHFTQSKDFK
FEVFCDWLTN DECYVSLDPD EKDRWGQSVA KVRAGFHPHD ERVAQYLVDR GIEVMKAMGA
HEAWGNVFTQ PTSNLVAGGC RFGDDPTTSV LDRNCRVHDC DNLYVTDGSF MPNGGSVTPT
FTIYANAFRV ADSIVERFAK G