Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2999 |
Symbol | |
ID | 6117314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3674937 |
End bp | 3676622 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641634541 |
Product | gluconate 2-dehydrogenase (acceptor) |
Protein accession | YP_001761365 |
Protein GI | 170727339 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.634456 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAGA GTAGAAAGTT TGATATCTGT ATTATTGGTA GCGGTGCGGG CGCAGGTCCC ATTGCTTATG AGCTTGCGAA AGCTGGGTAC AAGGTTGGTG TACTCGAAAA GGGCAGGTGG TTTAAAGAGA CAGATTTCTT CAAGGATGAG CAGCTAGGTC GCCATAGTGT ATTTCGTTCT CAGTTTAAGG ATGAGCGACA TACCCTTGAG GAGCCTAATG GTGATGGGAG CTGGTCATCA GATACCACGT CACAGTTTTG GGGAGGGAAT ATTGTCGGCG GCGCCTCTAA CTTTATGAGT GCGTATTTTC ACCGTCTTAA ACCTCAAGAT TTTAGGTTAG TTTCTGAATA TGGCAATATT GAGGGAGCAA ATACCGTTGA CTGGCCAATC AGTTACGATG AACTGGAGCC CTATTACACA AAAGTAGAGC AGCTTGTTGG CGTATCGGGC AAAGTGGTTG AACATCCACA TTTAGAGCCT CGCTCGAGTA AGGACTTCCC CTTTCCCCCA ACGGCTGAAC ATCCGGTTGC ACAACGATTC GATAGCGCTT GTAAAGGCTT AAAGTTACAC CCTCTCCCAA TGGCGCGTGG CATTCTGTCT CAGCCCTTTA ATGGTCGGCT TAGCTGCGAG TATTCAGGGT ATTGCGGTAG CTATGGTTGT CATTCTGGGG CCAAGGCGAG TTCGCGAGCT GCCTTGTTAG ATACAGCGAC TAAAACTGGA AACTGTGAAA TAGTCACTCA GGCTAAGGTA TACAGGCTCA ATACCGATGA CTCAGGTAAG GTCAACTCGG TGGATTACTT TGACCTTACT GACAATGATA AGAGTGTTCG AGTGACTGCA AACATTTTTG TGGTGGCTTG CTACGCCATC GAAAGTTCAC GCTTGTTGTT AAGTAGTCGA GGGAAGAAGC ACCCTGATGG TATTGGGAAT AATCACGGCC AAGTGGGCAA GAATCTACAT TGCTGTGCCG GTGGCACAGG CCACGGTGTG TTCGAGCTTG ATAAGTTAAA ATCCTTTGAA GCGAAACAGC TTAAAACACG AGGGCCATTT TTCAATCGTG CTTTGCAAGA CTGGTACGAG ATTGATGATG AAAGTGTATC TGATAAGCCG ATTAAAGGGG GCACACTGGA TTTTGTGTTC GATCCACCGT CTCCTACCTC CGAGGTGTCA AGCCTCAAAT GGCAGGGAGA AAACCTGTTG TGGGGCACAC CACTTAAACA GAGGATAAAG TCACATTTTA CTCAATCTAA AGACTTTAAG TTTGAGGTTT TTTGCGATTG GCTGACCAAT GATGAGTGCT ATGTGAGCCT AGATCCCGAT GAAAAGGACA GGTGGGGCCA GAGTGTGGCT AAGGTGCGGG CAGGTTTTCA TCCCCATGAT GAGAGGGTAG CGCAATACTT GGTTGATCGC GGGATCGAGG TGATGAAAGC CATGGGGGCG CACGAAGCAT GGGGCAATGT GTTTACTCAG CCAACCTCTA ATTTAGTCGC GGGGGGATGC CGTTTTGGTG ACGACCCTAC AACCTCGGTG CTAGACAGAA ACTGTCGGGT ACATGATTGC GATAATCTCT ATGTGACAGA TGGCAGCTTT ATGCCAAATG GTGGCTCGGT AACACCTACT TTTACCATTT ATGCGAATGC CTTTCGGGTC GCTGATAGTA TTGTAGAGCG CTTTGCTAAG GGCTAG
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Protein sequence | MKQSRKFDIC IIGSGAGAGP IAYELAKAGY KVGVLEKGRW FKETDFFKDE QLGRHSVFRS QFKDERHTLE EPNGDGSWSS DTTSQFWGGN IVGGASNFMS AYFHRLKPQD FRLVSEYGNI EGANTVDWPI SYDELEPYYT KVEQLVGVSG KVVEHPHLEP RSSKDFPFPP TAEHPVAQRF DSACKGLKLH PLPMARGILS QPFNGRLSCE YSGYCGSYGC HSGAKASSRA ALLDTATKTG NCEIVTQAKV YRLNTDDSGK VNSVDYFDLT DNDKSVRVTA NIFVVACYAI ESSRLLLSSR GKKHPDGIGN NHGQVGKNLH CCAGGTGHGV FELDKLKSFE AKQLKTRGPF FNRALQDWYE IDDESVSDKP IKGGTLDFVF DPPSPTSEVS SLKWQGENLL WGTPLKQRIK SHFTQSKDFK FEVFCDWLTN DECYVSLDPD EKDRWGQSVA KVRAGFHPHD ERVAQYLVDR GIEVMKAMGA HEAWGNVFTQ PTSNLVAGGC RFGDDPTTSV LDRNCRVHDC DNLYVTDGSF MPNGGSVTPT FTIYANAFRV ADSIVERFAK G
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