| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2984 |
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| Symbol | truA |
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| ID | 6117299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3654385 |
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| End bp | 3655170 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641634526 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_001761350 |
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| Protein GI | 170727324 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000426991 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.427567 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGAGTAG CGTTAGGTAT CGAATATGAT GGCAGTAAGT ATTTTGGCTG GCAGCGTCAA
GTTGAGGTTG ATTCAGTTCA AGCTCAATTA GAGAGAGCAC TTTCCAAAGT GGCTAATGAA
CCGATTAGTG TTCATTGTGC TGGTAGGACG GACACTGGTG TTCATGCAAC TGGCCAAGTT
GTTCATTTCG ACACAGATGC GATACGTAAA GAGTCTGCTT GGACTTTAGG TGTCAATGTC
AGCTTACCTG ACGATATTGC TGTGCGATGG GCTAAAGTGG TCGATGAGGA TTTTCATGCT
CGTTTTTCTG CTACAGCGCG TCGCTATCGC TATATGATCT ATAACTATCA GCTTCGCCCA
GGGATATTAC GCTCTGGGGT CAGCCACTAT AGAACTCACC TTGATGAGAA CAAGATGCAT
GAAGCGGCGC AACACTTTGT GGGTGAACAT GACTTTACTA GTTTCAGGGC GCTTCACTGT
CAGTCCAAGT CGCCTAATCG CAATGTTCAT GAGGTGAATG TAACTCGTCA GGGGATGTAT
ATCTGTGTCG ATATTAAAGC CAATGCATTT TTACATCATA TGGTTAGAAA TATTGTTGGC
TCCTTGATTG AGATTGGTTT AGGTCATCAA AGTCATGAGT GGATCCCTGA GCTGCTGGCA
CTAAAAGACA GGAGTAAGGC TGCACCAACG GCAAAACCTA ACGGTTTGTA TATGGTCGAT
GTCACTTACC CTGAGCATTT TCAGTTACCT AAGTTGGCTT TAGGTCCTCT GTTTATGCTG
GATTAA
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| Protein sequence | MRVALGIEYD GSKYFGWQRQ VEVDSVQAQL ERALSKVANE PISVHCAGRT DTGVHATGQV
VHFDTDAIRK ESAWTLGVNV SLPDDIAVRW AKVVDEDFHA RFSATARRYR YMIYNYQLRP
GILRSGVSHY RTHLDENKMH EAAQHFVGEH DFTSFRALHC QSKSPNRNVH EVNVTRQGMY
ICVDIKANAF LHHMVRNIVG SLIEIGLGHQ SHEWIPELLA LKDRSKAAPT AKPNGLYMVD
VTYPEHFQLP KLALGPLFML D
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