Gene Swoo_2945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2945 
Symbol 
ID6117260 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp3607312 
End bp3609648 
Gene Length2337 bp 
Protein Length778 aa 
Translation table11 
GC content43% 
IMG OID641634489 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001761313 
Protein GI170727287 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGGGA TATTCAATCG AATACAAACC CGCATCTTTG GCTTCTTCGT TATCTTGTTG 
ATAGCGGTTC AAGCTATCTC ATTTTCAATC ACTTTTTTTG CCAATAAACG GCTTGAGCAG
CAGCAACTGA GTAATCAGCT CTCTGTAGCC GAGCTAGTGT TTAAGTCTGA TTATGGTAAA
CGTTACTACT ATCTTTCTGC TTTTGCCGAA ACCGCGGCGA AAGATTTCGG TCTTAAGGAT
ATTTTTATTG ATAACGATAG CCGCAGCTTT CTGGTGGCTT TGAATAACCA TAGAAAACGA
ATTAACGCCG ATCTGGCTAT CGCTGTGGAT AGGCATGGAA CCATCATAGG TGAGTTGGTG
CTTAACACTG ACGTGCAGGA TTTGGGCAAG GTCAAAGTCG GACCTGAACA GGGTCAAGCA
TTTCGTTATC CCCTAGACGC AGGACTTGAA AATACTAACC CGCTCTATTC ATTGGGAGAG
AATATCTATC AGATTAAATT CGCACCCTTA ACCAGTGGTG CGGGTAATGT TATTGGTTGG
GTGGGGTTTG GCTTTATTAT TGATGATGCA TTAGCAAAAT CTTTGCAGTT ACACACAGGA
TTAAATGCGG GATTTGTTGC AACGCAGGGT GGGGCAGATA ATCAGTTTTT TGGTTTGTCA
GGCGAAGCGT TAAATTCTGC TGACAATGTC GCTGTTTCCG ATTTTATTGC TAATGGATTG
GTTAATGAAG ATTACGTGCT TTGGCATGAG CCGCTCGGCG TTGTCGACGA AAAGCAGGTA
CACGCCTTTA TGTTCCAGAC TCGGTACGAT GTACTTGAGT CATTCCAAAA GCAGTGGTTA
CAGCAGTTAG GTTTAATTTT ATTGATGTTG CCAATCTCTC TATTGTTGGC TTTTTTTATC
TCTAGTGGTG TGACAAAACC CATTAAACTC TTGATTGAGC AGGCAAGGTA TATCGCTAAG
GGGAACTACA ACTCCAAAGT TCAGGTGGGA AACAGTATCG AGATGCAGCT GTTAGCCGAG
GAGTTCACTG TGATGCAGCA GGCGATATTG AGTCGTGAGA GTGAAATTGC GTTTCAGGCA
TACCATGATC CTTTGACTAA GCTCGCCAAT AAGAATGAGC TAAAGCGTGT GACCTCCTCT
TGGTTTAACA ATAAATCAGC TGTTGCCATC TGTTTAATTG ACATTAAGCG TATGACCGAG
GTTAACGGTA CTTTAGGCCA TGTGGTGGGA GATGAAGTGA TAAAAGAGAT CGGCAAGCGA
TTGTCATCTT TCGATAATAT TGACCTTGTT TGCCATATGA CGGGAGACGA GTTTGCCTTA
GCGTTTAAAG CTATCTCTCC AAAAGAGCTA AGGGGCTTGA TGAGTGAGCT GCAAAAGAGC
ATTGAAGCAG AGTATCGCTA TCAAGAGATC TCTCTACATC TTCAACTCTC TATCGGGATC
AGTTTTGTTC ACTACCCAAG CGATTTAGAG ACTTTATTGC GTCAAGCGGA TACCGCCCTG
CAACATGCAA AGAAAAATCG ATTGGATCAA CAGATCTACA CTCAACAGAT CGATGGAAAT
ACATTGGAGC GTTTGCAGCT GATTAATGAG TTGAAATCCG CCATTGATAA TGGAGAGCTG
GTGCTTTTCT ACCAGCCCAA GTTAGATCTT AAACTAAAGA AGGTGACTCA TGTCGAGGCA
CTGGTGCGTT GGCAGCATCC AGATAGAGGC ATGATCCCGC CAGATCTGTT TATTCCGATT
GCTGAGCAGA TGGGGCAGAT GAATGCGCTA ACCCATTGGG TCATCAATGA GTCTCTCGAG
CAGTATCTTA AGTGGAAGTC TCAGGATATA GAGCTATGTA TCGCGATTAA TATTTCAGCT
GAAAACTTGA AGGATGAAGG TTTCTGCCAA TATGTGTTGG ATCTTGTTAC CCATAAAGGC
GTGCCAATAG ATGTACTCAC TTTAGAGATC ACCGAAGATG CCGTGGTATC TGATCCTGAA
AATGCAATAA AACAGCTGAC AGTACTGAAA AAAAGTGGTC TTAAACTATC GATTGATGAT
TACGGTACAG GGTATTCATC TTTGGCTCAG TTAAAACAGT TACCTGTGGA TGAACTGAAA
ATAGATAAAT CATTTGTGCA AAATTTAATG GTGAATCAAG ACGATCGCAT TATCGTGAAT
TCGACGTTAC AACTGGCTCA TAACTTAGGT TTAAGTGTGG TGGCCGAAGG CATAGAGGAT
GAGGGAGCAT TAAACTGGCT TATAGAGCGA GGGTGTGAAT TGGGGCAGGG ATTCTATCTA
TCTAGACCTT TAGATGCGGA CAAAATTACC GATTGGTTGG TTAGTTCACC CTATTAA
 
Protein sequence
MTGIFNRIQT RIFGFFVILL IAVQAISFSI TFFANKRLEQ QQLSNQLSVA ELVFKSDYGK 
RYYYLSAFAE TAAKDFGLKD IFIDNDSRSF LVALNNHRKR INADLAIAVD RHGTIIGELV
LNTDVQDLGK VKVGPEQGQA FRYPLDAGLE NTNPLYSLGE NIYQIKFAPL TSGAGNVIGW
VGFGFIIDDA LAKSLQLHTG LNAGFVATQG GADNQFFGLS GEALNSADNV AVSDFIANGL
VNEDYVLWHE PLGVVDEKQV HAFMFQTRYD VLESFQKQWL QQLGLILLML PISLLLAFFI
SSGVTKPIKL LIEQARYIAK GNYNSKVQVG NSIEMQLLAE EFTVMQQAIL SRESEIAFQA
YHDPLTKLAN KNELKRVTSS WFNNKSAVAI CLIDIKRMTE VNGTLGHVVG DEVIKEIGKR
LSSFDNIDLV CHMTGDEFAL AFKAISPKEL RGLMSELQKS IEAEYRYQEI SLHLQLSIGI
SFVHYPSDLE TLLRQADTAL QHAKKNRLDQ QIYTQQIDGN TLERLQLINE LKSAIDNGEL
VLFYQPKLDL KLKKVTHVEA LVRWQHPDRG MIPPDLFIPI AEQMGQMNAL THWVINESLE
QYLKWKSQDI ELCIAINISA ENLKDEGFCQ YVLDLVTHKG VPIDVLTLEI TEDAVVSDPE
NAIKQLTVLK KSGLKLSIDD YGTGYSSLAQ LKQLPVDELK IDKSFVQNLM VNQDDRIIVN
STLQLAHNLG LSVVAEGIED EGALNWLIER GCELGQGFYL SRPLDADKIT DWLVSSPY