| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2941 |
|---|
| Symbol | |
|---|
| ID | 6117256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 3601003 |
|---|
| End bp | 3602724 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641634485 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001761309 |
|---|
| Protein GI | 170727283 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000307884 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.662405 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCAT CTTTTTGGGA TGGTAAACGC GCATCCGGAT TGGCAGATCA GATAGACTTT
ACCCAATACG ACTCTGTCAT TCAGGCGATA GAGGAAGCCT TTGTCACCTA TGCAGATAGG
CCAGCCTTTA CCAGCTTAGG CCACACCTTA AGTTTTCGTC AGATAGATGA ATACAGTGCA
GCTTTCGCCC ATTACCTGCA AAACCATACC TCATTGCTCC CTGGCGATGC CATCGCTATT
CAGATGCTCA ATACGCTTCA ATATCCCATT GCTGTATACG GTGCATTAAG AGCGGGGCTA
CGTATCGTAA ACACTAACCC TCTCTACACC GAACGTGAGA TGATCCATCA ATTTAACGAC
TCTGGTGCTA AAGCGCTGTT GTGCATGGAT CTGTTTGCCA AGTCAGTAGA AAATATTCAA
GCTGAAACCA ATTTAGAGCT AATTTTAACC GCTAGCCTTG CAGATATGCT TCCCAGTGTG
AAACGCGTAC TTATCAACTC CACCGTAAAA CATATCAAAA AGATGGTTCC TAAATACCAT
CTACCTCAAG CCGTTTCGTT CAGAAAAGTG CTCAAACAAT CTTTAGGTAA AAGCTTTACC
CCAGCTCATC TCAGCCAGCC TGATGACACC ATAGTATTGC AATACACAGG CGGAACAACG
GGCGTTGCCA AAAGCGCTGA ACTCACCAAT GCCAATATCA TCGCTAACAT GTTGCAATCG
GGCTCAGTGA CAATGCAACA AGATGAACAT GGCCAGCAGT TAATGGGAGA TGACAAGCAA
TCCATCATGG TCGCGCCTCT GCCCCTTTAC CATATCTACT CTTTTACCGT GCATTTAATG
GCATTTTTCA GACTCGGAGA GCACAGCGTA CTTATCGCCA ACCCTAGAGA TACGGAAACC
TTCATTAAAG CGATGAAGCC ATTTAAAATC ACAGGTTTGA TGGGACTCAA CACCCTATTT
GTCTCTCTGA TGGAGAGCCC AAGCTTTAAG CAGCTCGATT TTAGTGAGAT GGTGTTCACC
CTATCTGGCG GTACAGCTTT GATGGATGAC ACCGCAGAGC GATGGAAAGA GATGACAGGG
GTTGGGATCT CTGAAGCCTA CGGCTTAACC GAATGCTCTC CAGCCGTCTG CATGAACCCC
TTTAATGGTT TGGAGCGTCA AGGCACTGTG GGTCAAGCAG TGGCAGGAAC TAGCCTCAAA
TGCATCAATG CCATTGGTGA TGAAGTGCCC GTCGGCGAGC GCGGTGAGCT TTGCGTCAAG
GGCCCTCAGG TGATGAAAGG TTACTGGAAT CGCCCTAAAG CGACGCGGGA ATCCTTTACC
CCGGATGGTG ACTGGCTACT GACTGGGGAT ATCGCCATTA TCGATGAAGA TGGCTATGTC
AGTATTGTCG ATCGCGTCAA AGATATGATC ATTGTCTCAG GCTTTAATGT ATTTCCCAAT
GAGATAGAGG GGGTGGTGGC TACACATCCA GATGTACTTA ACTGCGCCGC TATCGGGGTA
CCAGATCCTA AACAGGGCGA GGTAATAAAA CTCTATGTGG TCACTCAAGA CAATGTCACA
TTGAGCCCTG AAGAGCTTAA AGCCTTTTGT AAAGAGCGAC TTACTGCCTA TAAAATTCCG
CGTATCTATG AATTTAGAAA GGAGCTTCCT ATGTCACCGG TTGGCAAAAT TTTACGTCGT
CAACTTAAGG ACGACATAAT ACAAGAGCAG AAGATAGCTT AA
|
|---|
| Protein sequence | MDASFWDGKR ASGLADQIDF TQYDSVIQAI EEAFVTYADR PAFTSLGHTL SFRQIDEYSA
AFAHYLQNHT SLLPGDAIAI QMLNTLQYPI AVYGALRAGL RIVNTNPLYT EREMIHQFND
SGAKALLCMD LFAKSVENIQ AETNLELILT ASLADMLPSV KRVLINSTVK HIKKMVPKYH
LPQAVSFRKV LKQSLGKSFT PAHLSQPDDT IVLQYTGGTT GVAKSAELTN ANIIANMLQS
GSVTMQQDEH GQQLMGDDKQ SIMVAPLPLY HIYSFTVHLM AFFRLGEHSV LIANPRDTET
FIKAMKPFKI TGLMGLNTLF VSLMESPSFK QLDFSEMVFT LSGGTALMDD TAERWKEMTG
VGISEAYGLT ECSPAVCMNP FNGLERQGTV GQAVAGTSLK CINAIGDEVP VGERGELCVK
GPQVMKGYWN RPKATRESFT PDGDWLLTGD IAIIDEDGYV SIVDRVKDMI IVSGFNVFPN
EIEGVVATHP DVLNCAAIGV PDPKQGEVIK LYVVTQDNVT LSPEELKAFC KERLTAYKIP
RIYEFRKELP MSPVGKILRR QLKDDIIQEQ KIA
|
|---|
| |