| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2930 |
|---|
| Symbol | |
|---|
| ID | 6117245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 3587215 |
|---|
| End bp | 3588798 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641634474 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001761298 |
|---|
| Protein GI | 170727272 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0259797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.914708 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATA TAGCAAAATT TGCACTCGAT GATGACAGTC TGGTCGTCAT TATAGGCTCT
GGAGCTGGCG GGGGTACTGT CGCTAACGAG TTAGCTCAAA AAGGCATAAG TTCGGTTGTT
TTAGAAGCGG GTAAACGCTT TACGCTCGAA GATCTAAAAA ACAATGAATG GGAGATGTTT
ATGAAGCTGT CATGGCTTGA TAAGCGCATC TCAGCTGGAG GTTGGCACCA TTCAAAAAAC
CACACTAACT TACCCGCCTG GATCGTTAAA GGTGTCGGCG GTTCCTCTAT CCACTGGGCC
GGTGTTTCTC TTCGTTTTAA GCCACATGAA TTCAAAATGA AAAGTACCAA CGGCAATATC
GAAGGAGCAA ATGTCGCCGA TTGGCCAGTG ACATATGAAG AGGTAGCTCC CTACTACGTA
AAAGCCGAAC ACAAGATGGG CGTAACAGGT AAAGCAACTG ATACACCTGA TTTACCTGAA
AGCAGCCACA CAAAACTGCA CCGTATCGCA GCCGAGCGCA CAGGGATGAC TTTTACCAAT
GCACCGATGG CCATCAATTC AGTGCCTAAT GATGGTCGAC CTGCCTGTCA GCAAATCGGC
TTTTGTATGC AAGGTTGTCG TATTGGCGCC AAGTGGTCAA CCATGTACAC CGAGCTCCCC
AAAGCTGAAG CAACAGGTTT ATGTGAAATA CGACCTAACT GCATGGTGTT AAAGATTGAG
CACGATGAGA GTGGTAAGGC TACAGGTGTG CTTTATGTCG ATAAAGACGG TAATAAGAAA
CTGCAAAAAG CGCGAATTGT CTGTGTTGCT GCCAACTCAA TTGAATCACC AAGGCTACTG
TTAAATTCAG CCTCACAGAT GTTCCCCGAT GGGTTAGCTA ACTCATCAGG ACAAGTGGGT
AGAAACTACA TGGGCCACGT TACTGGTGGT GTTTATGGTG TTTTTCCTGA GCCCGTTAAT
ATGCATCGCG GCACATCAGT GCCAAGCTTA ATCACCAGCG AGCAAGCGAA TAAGCCTGAA
CGGGGTTTTG TCGCGGGATA TACCCTGGAA GTGTTATCTC TCGGCTTAGG TTTCTTATCT
GCCTTTTTGA AGCCTGGCAC TAGTGGTTGG GGAAGAGAGA TAGCTGAAGC CCTTGAGAAC
TACCAAAATA TGGCCGGTGT ATGGATTTGT GGAGAAGACC TTCCCGTAGA AACGAATCGA
ATCACACTGC ACCCAACCGA AAAAGATCAG CATGGCCTTC CCGTCCCTGT CATCACAAAA
ACAGATCACA ATAACGATGT AGTGATGCGC AATCATGCAT ATTCGCAGAT GGCAAAGCTC
TATAAATCTG TCGGCGCAAC CAAGGTACAC AACTTACCCG CTTATCCGAG TAGCCACAAT
ATGGGAACGA ACCGTATGAG TGAACACCCC TCCGATGGCG TCGTCAATAA ATGGGGACAA
GCACATGATG TTCCAAACCT GTTTATCTCT GATGGCAGTC AATTTGTCAC CAGTGCCGCC
GTTAACCCCA CCCTCACGAT TGTCGCGCTC GCCATTAGGC AAGCAGATCA TATTGCAGGA
CTAATGAAAA GCGGCCAAGT GTAG
|
|---|
| Protein sequence | MTNIAKFALD DDSLVVIIGS GAGGGTVANE LAQKGISSVV LEAGKRFTLE DLKNNEWEMF
MKLSWLDKRI SAGGWHHSKN HTNLPAWIVK GVGGSSIHWA GVSLRFKPHE FKMKSTNGNI
EGANVADWPV TYEEVAPYYV KAEHKMGVTG KATDTPDLPE SSHTKLHRIA AERTGMTFTN
APMAINSVPN DGRPACQQIG FCMQGCRIGA KWSTMYTELP KAEATGLCEI RPNCMVLKIE
HDESGKATGV LYVDKDGNKK LQKARIVCVA ANSIESPRLL LNSASQMFPD GLANSSGQVG
RNYMGHVTGG VYGVFPEPVN MHRGTSVPSL ITSEQANKPE RGFVAGYTLE VLSLGLGFLS
AFLKPGTSGW GREIAEALEN YQNMAGVWIC GEDLPVETNR ITLHPTEKDQ HGLPVPVITK
TDHNNDVVMR NHAYSQMAKL YKSVGATKVH NLPAYPSSHN MGTNRMSEHP SDGVVNKWGQ
AHDVPNLFIS DGSQFVTSAA VNPTLTIVAL AIRQADHIAG LMKSGQV
|
|---|
| |