| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2907 |
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| Symbol | |
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| ID | 6117222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3556154 |
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| End bp | 3557017 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641634451 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001761275 |
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| Protein GI | 170727249 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.191084 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0790045 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAA AATTGCAGAA AGTCTTGGCC CGTGCAGGCC ATGGCTCCCG TCGTGAGATG
GAGGCATGGA TTGCTGCAGG TCGAATTAGT ATAGATGGTG AGATCGCAAA TCTAGGTGAT
CGCGTCGAAG CGGATGTTAA GATCAGAATC GACGGACGTG CGGTGTCAAT TAAGTCTGAA
GAGGATTTAG TTTGCCGTGT GATCGCTTAT CACAAACCGG AGGGCGAGAT CTGTAGTCGC
AAAGATCCTG AAGGTCGTCC AACGGTTTTC GACCGTTTAC CTAAGACCCG TGATTCACGT
TGGGTTGCAG TTGGTCGTCT GGATATCAAC ACCTCTGGTT TACTGCTGTT TACATCGGAT
GGTGAGCTGG CTAACCGCTT AATGCACCCT TCAAATGAAG TTGAACGTGA ATATGCGGTG
CGTACTTTCG GTGAAGTGAC CGATGCTTGT ATTCAGCGCC TTCGTACTGG GGTGACTTTA
GAAGATGGCC CAGCCCATTT TGATAAAGTT AAAGCTGCCG GTGGTGAGGG GATGAACAAG
TGGTGGCATG TGTCACTTGC TGAAGGACGT AATCGTGAAG TTCGTCGTTT GTGGGAATCT
CAAGAGGTTC AGGTGAGCCG TCTTATCCGT ATTCGTTACG GTATGATTGA ATTACCAAAA
TCTTTGCCAC GTGGTGGCTG GGTTGAACTT GAACTTGAGC AGGTGAACTA TTTGCGTCAA
ACCGCCGGTT TAGCGATTGA GAATCGTACA CTGTTAGGTA CAGATAAACA CAGTGTTGCC
CGTGCGAAAG TTAAAAGCGC TAAAATTAAA CGTGCGGTTA ATAAGCATAA AGTGAATGCT
GCTAAAAATA CCCGTCAGCG TTAA
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| Protein sequence | MSEKLQKVLA RAGHGSRREM EAWIAAGRIS IDGEIANLGD RVEADVKIRI DGRAVSIKSE
EDLVCRVIAY HKPEGEICSR KDPEGRPTVF DRLPKTRDSR WVAVGRLDIN TSGLLLFTSD
GELANRLMHP SNEVEREYAV RTFGEVTDAC IQRLRTGVTL EDGPAHFDKV KAAGGEGMNK
WWHVSLAEGR NREVRRLWES QEVQVSRLIR IRYGMIELPK SLPRGGWVEL ELEQVNYLRQ
TAGLAIENRT LLGTDKHSVA RAKVKSAKIK RAVNKHKVNA AKNTRQR
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