| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2875 |
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| Symbol | |
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| ID | 6117190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3514134 |
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| End bp | 3516824 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641634421 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_001761245 |
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| Protein GI | 170727219 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00943225 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTGTCTA ATTCAGTAAT AGCTAAAGCT ATTCGGTTTT CATTAATCAG TGGCGCAGCA
ACTGCAGCAC TGACTGCACC AGCAGTTTTT GCAGCAACAG ATGATGAAAA AGTAGAAAGA
ATTGAAGTTA CAGGTTCACG TATTAAGCGT ACCGATATGG AAACTGCAAC TCCAGTAACC
GTATTAAGCG CTGATGATAT GGCAAAACAA GGTTTTACAA ACATTCAAGA TGCACTAGAA
AGCCTAACTT CCACAACAAG TGCAATGACG ACTCAATCAG TACACGGCTT CACTCCAGCA
GCCTCATCAA TCAGTCTTCG CGGTGCAGGT CCAAGTCGAA CTCTGACACT GATTAATGGT
AAGCGTCTTA ACCAATACCC AAAACCTGCA AATGGCACCG ATAACTTCGT TGATACAGCT
AACCTTCCAA TGGAAGCTGT ACAACGCATT GAAATTCTAC AGACTGGTGG CTCAGCCGTT
TATGGTGCAG ATGCTGTCGG TGGTGTTATC AACATCATCT TGAAAAAAGA CTTTGAAGGT
ATTGCTCTTA AATACCGCCA CGGTGACACT TTTGAAGGTG GTGGAGCAAG TGATCGTATA
GCACTTTCTG TTGGTGCATC ATCAGATCGT GGTAACGTAT CAAGCTTTAT TGAGTTTACT
GACAATCAAC AATTAAAAGC GACTGATCGT GAAAACTTTG GTCTTCATAC CGATAAAGTA
CCTCACAGTG AGTTTTCTCA ATATAGCTCA TACGGTGCGC GTATAGCTGG CGGCTCAGGT
GCTCGCGCAT TAACCGATGC AGAGTGTACA GCGGGTGGAT TCTTCTGGGA TGCAGCGCGT
AATTTATGTG GTTATGACCG TTCAAAATGG CGCGACCTTC AACCAGAAAG CACACGTTTT
ATCAGCTCTA CAAACTTTAA CTACGAGCTG TCAGATGACA TTAGCTTTGT GGGTCGTCTA
GATTTTGCAG AAGCAAAATC AACTACCCGT ATTGAGCCAA TGGCAATCAA TGACTACAAC
ATTAAGGTTG ATGGTAACAG CCTAACAGTC AGCAATGGTG ACCTGAGCAA AACATTTGCA
GACAAAACGA CAGCACTCGG TGGTGACTTT GCTAACGCAA CAGACGGTGA CTACTACTAC
GTTCGTCGTC TACACGAATT CAGCAACCGT ATGGGTGAAA CTAAAACTCG TAATTACTTC
TTCACCGCAG GCCTTGAAGG TGTAGTTTTT GAAGATTACA ACTGGGACGC CTCTGTAAAC
TATGGGCGTA CCAATGTAGA TGTTTTCCGT GGTGGCTATG CAACAGTTGC AGGTATGTTT
GATTACATCA CTGCAGGTGA CAACGGTAAC TCTCTACTAA AAAACATGAC TGCTGATGAT
GTTGAAGCAG CATCTTACTC CCCTTTTGAG AAAGCACAAT CAACTCAAAA GAATGTTCAG
GCTAATATTA CAGGTAGCGC TTTCGAGATG CCTGAAGGCG ATGCTCTATT CGCTTTCGGT
GCAGAGTATA CAGAGCAAGA TTACCAAACA GAGTCAGACT CTGAGTCAGC TAAAGGCAAC
ATCCTGACAA CTGGTGGTTC ATCAGGTGCA GGTGATCGCT CTTTCTGGGC GACTTATGCA
GAGCTAAGTA TTCCAGTTTT GGATGTGCTA ACTGTCGATG CTGCAGTTCG CTATGATAGA
TACAGTGACT TCGGTGGTAA CTTATCGCCA CAGATTGCAA TCGAGTACCG CCCTCTTGAG
GAACTGCTTG TTCGTGGTTC TGTCAGCAGT GTATTCCGCG CGCCAGATAT GCATCGTGTA
TACGGTGATG CAACTAATGG TTTCAACCAA GTTATTGACT TCAAACAGTG TCAAGCTATG
GGTGGTACGC CTGGTCAGCC TCACTCAGAT ACAAAAATCA ACGAGATCTG TAATGAACTG
CATATCACCA CTAAAACGGG TGCAAATAAA GATCTAGAAG CAGAAACAGG TTACACAGCA
AGTATAGGTG CGGTATGGGG AGGAGAGTCT CTCAATGCAT CATTAGATTT GTGGGAGTGG
AAGCTTGATG ACATGGTCAG TGACATCAGT GCAAGTAAAG CCGCGCGTGA ATATGAGCAA
TATGAAAATA TGCTGACACG TGATGCCGAT GGTACCATTA CTCATATTGA TGCTGTTGCT
CAAAACCTAG CCTTCCAAAA AGTTCGTGGT ATCGACTTAT CCGCAGGTTA TAACTGGGAT
CTTAACAATC TAGGTGAGCT TAAACTTAAC TTCAAGGGTA CATATATTCT GTTATCTGAA
GGTCAGCTTG CTCCAACAGA CCCTGTTGAA GATGACATAG ATAATGGTGG ACTGCCTCAA
TACCGTGCAA ACCTAGTACT TGGTTGGTTT ATCGATGATT TTGAAACAAC TTTAGGTGCT
TATCACACTG CTCGCATGCA TGGCATGCAG TACAAGTCAT TCAAAGAGTC AGCTGAAAAT
GCTGGTACTG AGTTCGACGA AAGTGCACAC GAAGTTGCTT CACAAACTAA GTGGAATCTG
ACAGCTGGTT ACACCATCAC TGACGATATT AAAGTTAAGG CTGGTGTCGT TAACCTATTT
GATGCTGGAC CAAACTTTGA TCCAACAGCA ACATCATGGC CACATTACCA GCGCTCAATC
TACAACGCAC GCGGTCGTGA ATGGTTCCTA GAAGGTGAAG TGAAGTTCTA A
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| Protein sequence | MLSNSVIAKA IRFSLISGAA TAALTAPAVF AATDDEKVER IEVTGSRIKR TDMETATPVT
VLSADDMAKQ GFTNIQDALE SLTSTTSAMT TQSVHGFTPA ASSISLRGAG PSRTLTLING
KRLNQYPKPA NGTDNFVDTA NLPMEAVQRI EILQTGGSAV YGADAVGGVI NIILKKDFEG
IALKYRHGDT FEGGGASDRI ALSVGASSDR GNVSSFIEFT DNQQLKATDR ENFGLHTDKV
PHSEFSQYSS YGARIAGGSG ARALTDAECT AGGFFWDAAR NLCGYDRSKW RDLQPESTRF
ISSTNFNYEL SDDISFVGRL DFAEAKSTTR IEPMAINDYN IKVDGNSLTV SNGDLSKTFA
DKTTALGGDF ANATDGDYYY VRRLHEFSNR MGETKTRNYF FTAGLEGVVF EDYNWDASVN
YGRTNVDVFR GGYATVAGMF DYITAGDNGN SLLKNMTADD VEAASYSPFE KAQSTQKNVQ
ANITGSAFEM PEGDALFAFG AEYTEQDYQT ESDSESAKGN ILTTGGSSGA GDRSFWATYA
ELSIPVLDVL TVDAAVRYDR YSDFGGNLSP QIAIEYRPLE ELLVRGSVSS VFRAPDMHRV
YGDATNGFNQ VIDFKQCQAM GGTPGQPHSD TKINEICNEL HITTKTGANK DLEAETGYTA
SIGAVWGGES LNASLDLWEW KLDDMVSDIS ASKAAREYEQ YENMLTRDAD GTITHIDAVA
QNLAFQKVRG IDLSAGYNWD LNNLGELKLN FKGTYILLSE GQLAPTDPVE DDIDNGGLPQ
YRANLVLGWF IDDFETTLGA YHTARMHGMQ YKSFKESAEN AGTEFDESAH EVASQTKWNL
TAGYTITDDI KVKAGVVNLF DAGPNFDPTA TSWPHYQRSI YNARGREWFL EGEVKF
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