Gene Swoo_2858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2858 
Symbol 
ID6117173 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand- 
Start bp3494533 
End bp3495210 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content43% 
IMG OID641634404 
ProductTetR family transcriptional regulator 
Protein accessionYP_001761228 
Protein GI170727202 
COG category[S] Function unknown 
COG ID[COG3226] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.211856 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones6 
Fosmid unclonability p-value0.00171809 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCCACC CATTGAGCTA CATTGGTCGC CAGACAAGCC GAAGTGACGG AGAAGCAAGA 
AGGGTGACTA TTCTTGAGGC AACGCTTAGG CTCATTGTCA AAGAGGGAAT ACGTGGTGTA 
AGGCATAGAG CAGTGGCCAA AGAGGCGGGA GTCCCTTTAG CGTCAACGAC CTATTACTTC 
AAGGATATTA AAGTCTTGAT CAGTGACTCT TTAACTTATT TTGCCGAGAA GACATTATGG 
ATGAACAAGG CCTTGGAAGC CCGCAGCTTT GAGTTGATAA ATTTTCTCGG TGAGGATGGA 
AAGAGTCGTG ATGATGAGCA TCTAGTGAAA TATTTAACCC AGTTTATCTG CGAGCATATT 
CGTGAACAGG TCAAGCACAG TGACGATAGG ATATTAGAGA TGGCTTTTCA CGAGGAAGCG 
CTGCGAAATC GTCAACTGGC AGGGGCTATC AAAACCTTAG ATGATTCATT TTTAGCAACA 
ATAACGCTTT TTTTTCAAAA ACTAGAGTCT GATACTTGTC TAGCCGATGC CTATCAGGTG 
CTGGGATTGA TTAAGCTGCT TGAGTATCAA TATGTGATGA GGGGCAATAT CGATGAAGAT 
AAAGCCCAGT TTGAATCTAT CGTTAACGCT AGCGTTCGAA AAATCATAGG TCACAGGGAG 
TTATCAATCA GTATATAG
 
Protein sequence
MSHPLSYIGR QTSRSDGEAR RVTILEATLR LIVKEGIRGV RHRAVAKEAG VPLASTTYYF 
KDIKVLISDS LTYFAEKTLW MNKALEARSF ELINFLGEDG KSRDDEHLVK YLTQFICEHI 
REQVKHSDDR ILEMAFHEEA LRNRQLAGAI KTLDDSFLAT ITLFFQKLES DTCLADAYQV 
LGLIKLLEYQ YVMRGNIDED KAQFESIVNA SVRKIIGHRE LSISI